Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.01□□□□□ -1.61
RNF4P78317 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.01□□□□□ -1.61
RNF4P78317 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.01□□□□□ -1.61
RNF4P78317 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC5.01□□□□□ -1.61
RNF4P78317 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
RNF4P78317 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
RNF4P78317 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5□□□□□ -1.61
RNF4P78317 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC5□□□□□ -1.61
RNF4P78317 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5□□□□□ -1.61
RNF4P78317 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5□□□□□ -1.61
RNF4P78317 AC007938.2-201ENST00000604666 2634 ntBASIC5□□□□□ -1.61
RNF4P78317 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
RNF4P78317 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5□□□□□ -1.61
RNF4P78317 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5□□□□□ -1.61
RNF4P78317 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC5□□□□□ -1.61
RNF4P78317 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
RNF4P78317 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5□□□□□ -1.61
RNF4P78317 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
RNF4P78317 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
RNF4P78317 RNA5SP183-201ENST00000362452 119 ntBASIC5□□□□□ -1.61
RNF4P78317 RNU6-1287P-201ENST00000362914 107 ntBASIC5□□□□□ -1.61
RNF4P78317 Y_RNA.144-201ENST00000363521 113 ntBASIC5□□□□□ -1.61
RNF4P78317 RNU6-61P-201ENST00000365528 109 ntBASIC5□□□□□ -1.61
RNF4P78317 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5□□□□□ -1.61
RNF4P78317 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5□□□□□ -1.61
RNF4P78317 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5□□□□□ -1.61
RNF4P78317 RNU6-1060P-201ENST00000384664 107 ntBASIC5□□□□□ -1.61
RNF4P78317 AL359643.1-201ENST00000404109 423 ntBASIC5□□□□□ -1.61
RNF4P78317 RNA5SP487-201ENST00000410186 122 ntBASIC5□□□□□ -1.61
RNF4P78317 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5□□□□□ -1.61
RNF4P78317 RPS12P5-201ENST00000423449 371 ntBASIC5□□□□□ -1.61
RNF4P78317 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5□□□□□ -1.61
RNF4P78317 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC5□□□□□ -1.61
RNF4P78317 RPS11P7-201ENST00000442125 465 ntBASIC5□□□□□ -1.61
RNF4P78317 GAPDHP25-201ENST00000447061 1001 ntBASIC5□□□□□ -1.61
RNF4P78317 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC5□□□□□ -1.61
RNF4P78317 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
RNF4P78317 AC079804.1-201ENST00000461922 436 ntBASIC5□□□□□ -1.61
RNF4P78317 COPS8P2-201ENST00000473228 627 ntBASIC5□□□□□ -1.61
RNF4P78317 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5□□□□□ -1.61
RNF4P78317 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5□□□□□ -1.61
RNF4P78317 AC024558.1-201ENST00000505008 528 ntBASIC5□□□□□ -1.61
RNF4P78317 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC5□□□□□ -1.61
RNF4P78317 PGAM1P13-201ENST00000507497 754 ntBASIC5□□□□□ -1.61
RNF4P78317 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC5□□□□□ -1.61
RNF4P78317 AC104806.1-201ENST00000508720 308 ntBASIC5□□□□□ -1.61
RNF4P78317 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC5□□□□□ -1.61
RNF4P78317 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5□□□□□ -1.61
RNF4P78317 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC5□□□□□ -1.61
RNF4P78317 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC5□□□□□ -1.61
RNF4P78317 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC5□□□□□ -1.61
RNF4P78317 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC5□□□□□ -1.61
RNF4P78317 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5□□□□□ -1.61
RNF4P78317 AC007151.1-201ENST00000572774 483 ntBASIC5□□□□□ -1.61
RNF4P78317 AC092747.3-201ENST00000603769 301 ntBASIC5□□□□□ -1.61
RNF4P78317 SUMO2P15-201ENST00000604285 278 ntBASIC5□□□□□ -1.61
RNF4P78317 AC104687.2-201ENST00000604442 342 ntBASIC5□□□□□ -1.61
RNF4P78317 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5□□□□□ -1.61
RNF4P78317 AC012443.1-201ENST00000605605 231 ntBASIC5□□□□□ -1.61
RNF4P78317 DUSP12P1-201ENST00000612874 516 ntBASIC5□□□□□ -1.61
RNF4P78317 AC109583.2-201ENST00000617367 129 ntBASIC5□□□□□ -1.61
RNF4P78317 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5□□□□□ -1.61
RNF4P78317 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5□□□□□ -1.61
RNF4P78317 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5□□□□□ -1.61
RNF4P78317 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5□□□□□ -1.61
RNF4P78317 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5□□□□□ -1.61
RNF4P78317 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
RNF4P78317 AC007529.1-201ENST00000418574 2178 ntBASIC4.99□□□□□ -1.61
RNF4P78317 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.99□□□□□ -1.61
RNF4P78317 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC4.99□□□□□ -1.61
RNF4P78317 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
RNF4P78317 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
RNF4P78317 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
RNF4P78317 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
RNF4P78317 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
RNF4P78317 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
RNF4P78317 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
RNF4P78317 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
RNF4P78317 Y_RNA.31-201ENST00000362574 102 ntBASIC4.99□□□□□ -1.61
RNF4P78317 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
RNF4P78317 Y_RNA.459-201ENST00000384251 102 ntBASIC4.99□□□□□ -1.61
RNF4P78317 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
RNF4P78317 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC4.99□□□□□ -1.61
RNF4P78317 RPL37P10-201ENST00000412884 288 ntBASIC4.99□□□□□ -1.61
RNF4P78317 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC4.99□□□□□ -1.61
RNF4P78317 AL590609.2-201ENST00000421430 368 ntBASIC4.99□□□□□ -1.61
RNF4P78317 AL355433.1-201ENST00000422804 300 ntBASIC4.99□□□□□ -1.61
RNF4P78317 AC138761.5-201ENST00000433967 325 ntBASIC4.99□□□□□ -1.61
RNF4P78317 NDUFB4P8-201ENST00000435351 367 ntBASIC4.99□□□□□ -1.61
RNF4P78317 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC4.99□□□□□ -1.61
RNF4P78317 MRPS31P2-201ENST00000451581 518 ntBASIC4.99□□□□□ -1.61
RNF4P78317 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC4.99□□□□□ -1.61
RNF4P78317 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC4.99□□□□□ -1.61
RNF4P78317 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.99□□□□□ -1.61
RNF4P78317 RPS4XP1-201ENST00000482189 787 ntBASIC4.99□□□□□ -1.61
RNF4P78317 RN7SL629P-201ENST00000489622 285 ntBASIC4.99□□□□□ -1.61
RNF4P78317 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC4.99□□□□□ -1.61
RNF4P78317 AC093303.1-201ENST00000514549 295 ntBASIC4.99□□□□□ -1.61
RNF4P78317 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC4.99□□□□□ -1.61
RNF4P78317 RNU6-1046P-201ENST00000516538 107 ntBASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms