Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC3.04□□□□□ -1.92
COL4A4P53420 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC3.04□□□□□ -1.92
COL4A4P53420 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.04□□□□□ -1.92
COL4A4P53420 AC245036.5-201ENST00000596330 847 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 BNIP3P8-201ENST00000597863 560 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 AL450270.1-201ENST00000606160 391 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC3.04□□□□□ -1.92
COL4A4P53420 AL031667.3-201ENST00000620124 655 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
COL4A4P53420 AP000526.1-201ENST00000603308 1388 ntBASIC3.04□□□□□ -1.92
COL4A4P53420 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
COL4A4P53420 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC3.03□□□□□ -1.92
COL4A4P53420 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
COL4A4P53420 Y_RNA.40-201ENST00000362645 93 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL4A4P53420 AL138880.1-201ENST00000405824 642 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 AC105402.1-201ENST00000413336 545 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 AC010099.3-201ENST00000423896 409 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 FTH1P6-201ENST00000430768 320 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 TRBV26OR9-2-201ENST00000432077 293 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.03□□□□□ -1.92
COL4A4P53420 MOB1AP2-201ENST00000446060 614 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC3.03□□□□□ -1.92
COL4A4P53420 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
COL4A4P53420 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.03□□□□□ -1.92
COL4A4P53420 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC3.03□□□□□ -1.92
COL4A4P53420 RN7SL633P-201ENST00000488974 297 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC3.03□□□□□ -1.92
COL4A4P53420 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC3.03□□□□□ -1.92
COL4A4P53420 MTCO2P9-201ENST00000503214 694 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.03□□□□□ -1.92
COL4A4P53420 AC008837.1-201ENST00000511513 412 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 RNU6-1102P-201ENST00000516149 96 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 VTA1P2-201ENST00000520205 911 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
COL4A4P53420 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC3.03□□□□□ -1.92
COL4A4P53420 AC007424.1-203ENST00000554613 687 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.03□□□□□ -1.92
COL4A4P53420 ATP5F1P7-201ENST00000567330 760 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 AP005136.1-201ENST00000579765 429 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 AC119751.7-201ENST00000600494 245 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 GAS5-AS1-201ENST00000602767 694 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
COL4A4P53420 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC3.03□□□□□ -1.92
COL4A4P53420 AL163051.2-201ENST00000618976 735 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 AC091304.6-201ENST00000619761 202 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 AC068792.1-201ENST00000621354 417 ntBASIC3.03□□□□□ -1.92
COL4A4P53420 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.03□□□□□ -1.92
COL4A4P53420 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
COL4A4P53420 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.03□□□□□ -1.92
COL4A4P53420 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
COL4A4P53420 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
COL4A4P53420 PWAR6-201ENST00000552334 4618 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
COL4A4P53420 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.02□□□□□ -1.93
COL4A4P53420 AC119751.3-201ENST00000399720 670 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 TRIM60P5Y-201ENST00000413946 574 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 AL592310.1-201ENST00000414330 671 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.02□□□□□ -1.93
COL4A4P53420 AC009518.2-201ENST00000418056 731 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC3.02□□□□□ -1.93
COL4A4P53420 MTND4LP14-201ENST00000429447 288 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC3.02□□□□□ -1.93
COL4A4P53420 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC3.02□□□□□ -1.93
COL4A4P53420 THAP5P1-201ENST00000439089 262 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 CBX1P4-201ENST00000439415 457 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 AL162389.1-201ENST00000449233 177 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 RPS4XP6-201ENST00000477670 797 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 AC126121.1-201ENST00000482313 553 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 AC117522.3-201ENST00000507974 584 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.02□□□□□ -1.93
COL4A4P53420 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC3.02□□□□□ -1.93
COL4A4P53420 AP003355.1-201ENST00000518956 587 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 PDCL2P2-201ENST00000533651 189 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.02□□□□□ -1.93
COL4A4P53420 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC3.02□□□□□ -1.93
COL4A4P53420 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC3.02□□□□□ -1.93
COL4A4P53420 AC009977.1-201ENST00000586015 570 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.02□□□□□ -1.93
COL4A4P53420 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC3.02□□□□□ -1.93
COL4A4P53420 AL158827.2-201ENST00000602494 330 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 AL606834.3-201ENST00000602615 496 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 AC079089.3-201ENST00000603094 673 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 AC113368.1-201ENST00000603736 382 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 AL133507.1-201ENST00000605269 557 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 AL158042.1-201ENST00000605338 460 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 AC015849.6-201ENST00000605454 474 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC3.02□□□□□ -1.93
COL4A4P53420 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL4A4P53420 VN1R9P-201ENST00000614184 867 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 AC006111.3-201ENST00000622137 383 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.02□□□□□ -1.93
COL4A4P53420 AL691447.3-201ENST00000635020 330 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 MTND4P8-201ENST00000514997 1362 ntBASIC3.02□□□□□ -1.93
COL4A4P53420 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.02□□□□□ -1.93
COL4A4P53420 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.02□□□□□ -1.93
COL4A4P53420 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms