Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.09□□□□□ -1.75
PTPN9P43378 HSFY4P-201ENST00000415994 1181 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 AC016907.1-201ENST00000419483 435 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 RPL31P45-201ENST00000419532 356 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
PTPN9P43378 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.09□□□□□ -1.75
PTPN9P43378 AL035410.1-201ENST00000427409 427 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC4.09□□□□□ -1.75
PTPN9P43378 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.09□□□□□ -1.75
PTPN9P43378 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC4.09□□□□□ -1.75
PTPN9P43378 AL831737.1-201ENST00000441288 271 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.09□□□□□ -1.75
PTPN9P43378 HSPE1P28-201ENST00000443139 211 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 TAF9P1-201ENST00000445421 515 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 BMI1P1-201ENST00000445879 941 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 MTCO2P7-201ENST00000446518 666 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 AL162151.2-201ENST00000448875 158 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 RPS17P13-201ENST00000448974 407 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 PAXBP1P1-201ENST00000449315 447 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 TAF9P2-201ENST00000454958 515 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 PLGLA-201ENST00000465668 449 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 AC087312.1-201ENST00000471411 480 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 RPS4XP15-201ENST00000489210 795 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 AC106872.3-201ENST00000495104 446 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC4.09□□□□□ -1.75
PTPN9P43378 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.09□□□□□ -1.75
PTPN9P43378 AC022447.3-201ENST00000506865 495 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC4.09□□□□□ -1.75
PTPN9P43378 TMEM248P1-201ENST00000510579 951 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 HIGD1AP3-201ENST00000515857 278 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC4.09□□□□□ -1.75
PTPN9P43378 OR8L1P-201ENST00000534005 955 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
PTPN9P43378 TOMM20P2-201ENST00000540082 421 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.09□□□□□ -1.75
PTPN9P43378 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC4.09□□□□□ -1.75
PTPN9P43378 AC053481.3-201ENST00000577881 843 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 AP001180.3-201ENST00000582221 145 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 AC090116.1-201ENST00000615679 446 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 AC092140.2-201ENST00000618027 521 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 AC004009.2-201ENST00000623016 728 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 AP001486.2-201ENST00000561652 5113 ntBASIC4.09□□□□□ -1.75
PTPN9P43378 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
PTPN9P43378 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
PTPN9P43378 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
PTPN9P43378 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.09□□□□□ -1.75
PTPN9P43378 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.76
PTPN9P43378 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.76
PTPN9P43378 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.09□□□□□ -1.76
PTPN9P43378 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PTPN9P43378 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PTPN9P43378 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PTPN9P43378 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
PTPN9P43378 MIR372-201ENST00000362225 67 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 RNU6-623P-201ENST00000363143 105 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 Y_RNA.318-201ENST00000365131 97 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 SNORD82-201ENST00000365530 70 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PTPN9P43378 MIR153-1-201ENST00000384914 90 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
PTPN9P43378 RPL31P1-201ENST00000398116 372 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PTPN9P43378 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC4.08□□□□□ -1.76
PTPN9P43378 BTF3L4P1-201ENST00000413813 468 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 HMGB1P11-201ENST00000413899 637 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 Z97055.1-201ENST00000419730 712 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 AL389915.1-201ENST00000422463 466 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 RPS27AP14-201ENST00000422868 454 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC4.08□□□□□ -1.76
PTPN9P43378 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.08□□□□□ -1.76
PTPN9P43378 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC4.08□□□□□ -1.76
PTPN9P43378 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC4.08□□□□□ -1.76
PTPN9P43378 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.08□□□□□ -1.76
PTPN9P43378 AL117339.2-201ENST00000430475 180 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 AL365184.2-201ENST00000431139 435 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC4.08□□□□□ -1.76
PTPN9P43378 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC4.08□□□□□ -1.76
PTPN9P43378 MTCO2P16-201ENST00000436962 677 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.08□□□□□ -1.76
PTPN9P43378 AL022578.1-201ENST00000439330 1433 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 TRIM60P18-201ENST00000441518 828 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.08□□□□□ -1.76
PTPN9P43378 RPL21P89-201ENST00000444021 467 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 RANP8-201ENST00000444720 713 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 AL360221.1-201ENST00000445989 335 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC4.08□□□□□ -1.76
PTPN9P43378 RPL21P11-201ENST00000461458 483 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 AC104563.1-201ENST00000476147 376 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 AC091435.1-201ENST00000505442 584 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC4.08□□□□□ -1.76
PTPN9P43378 AC026726.1-201ENST00000512859 601 ntBASIC4.08□□□□□ -1.76
PTPN9P43378 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC4.08□□□□□ -1.76
PTPN9P43378 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.08□□□□□ -1.76
PTPN9P43378 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.08□□□□□ -1.76
PTPN9P43378 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.08□□□□□ -1.76
PTPN9P43378 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PTPN9P43378 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.08□□□□□ -1.76
PTPN9P43378 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC4.08□□□□□ -1.76
PTPN9P43378 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms