| TFE3 | P19532 | Z95331.1-201 | ENST00000623075 | 23112 nt | BASIC | 5.35 | □□□□□ -1.55 | | |
| TFE3 | P19532 | USF3-202 | ENST00000478658 | 8461 nt | APPRIS P2 TSL 5 BASIC | 5.35 | □□□□□ -1.55 | | |
| TFE3 | P19532 | MTUS1-202 | ENST00000297488 | 3731 nt | APPRIS ALT1 TSL 1 (best) BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | ZNF334-203 | ENST00000593880 | 2635 nt | TSL 1 (best) BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | AP001350.1-201 | ENST00000601906 | 1524 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | NRG1-220 | ENST00000539990 | 2401 nt | TSL 2 BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | AC092376.2-201 | ENST00000622621 | 4116 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | ZNF850-203 | ENST00000614887 | 7625 nt | APPRIS ALT2 TSL 1 (best) BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | RNF17-204 | ENST00000339524 | 2203 nt | TSL 2 BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | Y_RNA.138-201 | ENST00000363462 | 102 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | C2orf73-203 | ENST00000405749 | 576 nt | TSL 4 BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | MIR1250-201 | ENST00000408098 | 113 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | U3.36-201 | ENST00000408418 | 213 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | AL117381.1-201 | ENST00000412972 | 374 nt | TSL 3 BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | COX5BP7-201 | ENST00000414780 | 274 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | REREP1Y-201 | ENST00000422655 | 198 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | HMGN2P27-201 | ENST00000427352 | 270 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | AC009226.1-201 | ENST00000432413 | 539 nt | TSL 3 BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | ATP5HP2-201 | ENST00000433885 | 485 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | REREP2Y-201 | ENST00000439103 | 200 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | RPL34P20-201 | ENST00000442771 | 351 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | RPL23AP43-201 | ENST00000446445 | 471 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | AC002553.2-201 | ENST00000453217 | 340 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | AC096576.1-201 | ENST00000489014 | 359 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | SNRPCP2-201 | ENST00000504370 | 475 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | AC107398.2-201 | ENST00000508081 | 601 nt | TSL 5 BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | RNU6-1170P-201 | ENST00000515974 | 106 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | RNU6-64P-201 | ENST00000517119 | 105 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | AC109466.1-211 | ENST00000519327 | 496 nt | TSL 3 BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | AP005597.4-201 | ENST00000526762 | 229 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | AC084200.1-201 | ENST00000547370 | 547 nt | TSL 4 BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | AC011773.2-201 | ENST00000551479 | 285 nt | TSL 5 BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | MIR4424-201 | ENST00000585257 | 86 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | ZEB2-AS1-204 | ENST00000595109 | 855 nt | TSL 5 BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | AC133644.2-201 | ENST00000608142 | 540 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | AC093838.1-201 | ENST00000613014 | 469 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | AL136313.1-201 | ENST00000624804 | 202 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | SLC8A1-AS1-239 | ENST00000631142 | 623 nt | TSL 5 BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | C1orf141-202 | ENST00000371006 | 2053 nt | APPRIS P3 TSL 2 BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | AC244517.1-201 | ENST00000606030 | 2086 nt | BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | ZNF442-205 | ENST00000545749 | 1884 nt | APPRIS P1 TSL 5 BASIC | 5.34 | □□□□□ -1.55 | | |
| TFE3 | P19532 | OR12D1-207 | ENST00000514827 | 1712 nt | APPRIS P1 BASIC | 5.34 | □□□□□ -1.56 | | |
| TFE3 | P19532 | FGF13-202 | ENST00000315930 | 19519 nt | APPRIS P1 TSL 1 (best) BASIC | 5.34 | □□□□□ -1.56 | | |
| TFE3 | P19532 | SMNDC1-202 | ENST00000369603 | 4341 nt | APPRIS P1 TSL 1 (best) BASIC | 5.34 | □□□□□ -1.56 | | |
| TFE3 | P19532 | PWRN2-202 | ENST00000567246 | 4295 nt | TSL 1 (best) BASIC | 5.34 | □□□□□ -1.56 | | |
| TFE3 | P19532 | LINC02302-201 | ENST00000556405 | 2904 nt | TSL 2 BASIC | 5.34 | □□□□□ -1.56 | | |
| TFE3 | P19532 | SLC4A7-206 | ENST00000428386 | 7385 nt | TSL 1 (best) BASIC | 5.34 | □□□□□ -1.56 | | |
| TFE3 | P19532 | AKAP9-201 | ENST00000356239 | 12471 nt | APPRIS P2 TSL 1 (best) BASIC | 5.34 | □□□□□ -1.56 | | |
| TFE3 | P19532 | ZNF571-201 | ENST00000328550 | 4113 nt | APPRIS P1 TSL 1 (best) BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | AC027287.1-201 | ENST00000553115 | 1453 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | ANO6-205 | ENST00000441606 | 5955 nt | APPRIS ALT2 TSL 1 (best) BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | STK31-201 | ENST00000354639 | 3596 nt | TSL 1 (best) BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | DCLRE1A-201 | ENST00000361384 | 4468 nt | APPRIS P1 TSL 1 (best) BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | AC104793.1-201 | ENST00000508189 | 2840 nt | TSL 2 BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | RNU5E-6P-201 | ENST00000365574 | 115 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | AL583835.1-201 | ENST00000399570 | 407 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | AL035079.1-201 | ENST00000405210 | 287 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | RNA5SP107-201 | ENST00000411358 | 122 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | MTCO2P27-201 | ENST00000420740 | 428 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | PSMA2P3-201 | ENST00000429685 | 675 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | AC009238.2-201 | ENST00000431026 | 355 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | AC005094.1-201 | ENST00000440420 | 368 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | PPIAP3-201 | ENST00000450588 | 505 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | AC005538.1-201 | ENST00000455991 | 594 nt | TSL 3 BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | RNU7-180P-201 | ENST00000459240 | 63 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | RNU6-1045P-201 | ENST00000516321 | 107 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | LECT2-205 | ENST00000522943 | 574 nt | TSL 3 BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | MTND4P7-201 | ENST00000523876 | 130 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | CARD16-203 | ENST00000525374 | 503 nt | TSL 3 BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | AC092745.2-201 | ENST00000537764 | 620 nt | TSL 3 BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | AC006065.3-201 | ENST00000541769 | 419 nt | TSL 5 BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | AC005357.2-201 | ENST00000586473 | 583 nt | TSL 2 BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | AC090621.1-201 | ENST00000592121 | 419 nt | TSL 3 BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | LINC00907-211 | ENST00000601948 | 795 nt | TSL 5 BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | LLPHP1-201 | ENST00000603571 | 367 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | AC103710.3-201 | ENST00000608157 | 948 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | AL627230.1-201 | ENST00000613077 | 211 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | AL591926.8-201 | ENST00000616876 | 211 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | uc_338.34-201 | ENST00000617467 | 174 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | C9orf153-205 | ENST00000617985 | 333 nt | APPRIS ALT2 TSL 5 BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | MIR6719-201 | ENST00000622428 | 87 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | AL353662.3-201 | ENST00000625131 | 237 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | SOX2-OT-255 | ENST00000630150 | 649 nt | TSL 5 BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | IQCG-201 | ENST00000265239 | 2262 nt | APPRIS P1 TSL 1 (best) BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | GABRA3-201 | ENST00000370314 | 3712 nt | APPRIS P1 TSL 1 (best) BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | CARF-208 | ENST00000428585 | 2513 nt | TSL 2 BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | MNS1-201 | ENST00000260453 | 2023 nt | APPRIS P1 TSL 1 (best) BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | AL359893.1-201 | ENST00000447628 | 1580 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | BDP1P-201 | ENST00000582658 | 1990 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | PABPC1P7-201 | ENST00000413177 | 1513 nt | BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | FKBP7-204 | ENST00000424785 | 2834 nt | APPRIS P3 TSL 1 (best) BASIC | 5.33 | □□□□□ -1.56 | | |
| TFE3 | P19532 | BAZ2B-203 | ENST00000392782 | 8058 nt | TSL 1 (best) BASIC | 5.32 | □□□□□ -1.56 | | |
| TFE3 | P19532 | CENPI-202 | ENST00000372927 | 3262 nt | APPRIS P3 TSL 5 BASIC | 5.32 | □□□□□ -1.56 | | |
| TFE3 | P19532 | MFF-206 | ENST00000392059 | 1710 nt | TSL 5 BASIC | 5.32 | □□□□□ -1.56 | | |
| TFE3 | P19532 | LINC02493-201 | ENST00000509964 | 1704 nt | TSL 1 (best) BASIC | 5.32 | □□□□□ -1.56 | | |
| TFE3 | P19532 | R3HCC1L-202 | ENST00000314594 | 3198 nt | APPRIS P1 TSL 5 BASIC | 5.32 | □□□□□ -1.56 | | |
| TFE3 | P19532 | OR1E2-201 | ENST00000248384 | 972 nt | APPRIS P1 BASIC | 5.32 | □□□□□ -1.56 | | |
| TFE3 | P19532 | SNURFL-201 | ENST00000309296 | 343 nt | BASIC | 5.32 | □□□□□ -1.56 | | |
| TFE3 | P19532 | MDM2-205 | ENST00000348801 | 798 nt | TSL 1 (best) BASIC | 5.32 | □□□□□ -1.56 | | |
| TFE3 | P19532 | RNU6-522P-201 | ENST00000364497 | 107 nt | BASIC | 5.32 | □□□□□ -1.56 | | |