Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC5.13□□□□□ -1.59
COL6A1P12109 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC5.13□□□□□ -1.59
COL6A1P12109 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC5.13□□□□□ -1.59
COL6A1P12109 RNA5SP360-201ENST00000516555 118 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 Y_RNA.704-201ENST00000516851 102 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 AC023632.4-201ENST00000517783 191 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 AC105031.1-201ENST00000518550 476 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC5.13□□□□□ -1.59
COL6A1P12109 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC5.13□□□□□ -1.59
COL6A1P12109 AF235103.2-201ENST00000525753 346 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL6A1P12109 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.13□□□□□ -1.59
COL6A1P12109 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.13□□□□□ -1.59
COL6A1P12109 CBX3P5-201ENST00000552017 521 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC5.13□□□□□ -1.59
COL6A1P12109 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC5.13□□□□□ -1.59
COL6A1P12109 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC5.13□□□□□ -1.59
COL6A1P12109 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC5.13□□□□□ -1.59
COL6A1P12109 MIR544B-201ENST00000582372 78 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC5.13□□□□□ -1.59
COL6A1P12109 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.13□□□□□ -1.59
COL6A1P12109 AP001521.1-201ENST00000609150 300 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 MIR6075-201ENST00000620782 95 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 MIR3662-201ENST00000637030 95 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 AL450345.1-202ENST00000605741 3881 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC5.13□□□□□ -1.59
COL6A1P12109 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC5.13□□□□□ -1.59
COL6A1P12109 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL6A1P12109 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
COL6A1P12109 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
COL6A1P12109 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL6A1P12109 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL6A1P12109 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.12□□□□□ -1.59
COL6A1P12109 AC108467.2-201ENST00000617640 1597 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.12□□□□□ -1.59
COL6A1P12109 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A1P12109 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.12□□□□□ -1.59
COL6A1P12109 MIR208A-201ENST00000362287 71 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 RNU6-251P-201ENST00000363235 104 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 RNU6-1103P-201ENST00000384150 107 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 AL356057.2-201ENST00000403318 432 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 MIR1250-201ENST00000408098 113 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 MIR1305-201ENST00000408300 86 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 HYKK-202ENST00000408962 847 ntTSL 5 BASIC5.12□□□□□ -1.59
COL6A1P12109 RN7SKP16-201ENST00000410180 299 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 RN7SKP202-201ENST00000410439 330 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 AC069218.2-201ENST00000411665 344 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC5.12□□□□□ -1.59
COL6A1P12109 OR6K1P-201ENST00000456766 971 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.12□□□□□ -1.59
COL6A1P12109 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC5.12□□□□□ -1.59
COL6A1P12109 FAM172BP-201ENST00000487497 1089 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 AC007182.2-201ENST00000489251 402 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 RPL35P6-201ENST00000490024 372 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 NIFKP7-201ENST00000503365 834 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC5.12□□□□□ -1.59
COL6A1P12109 RNU6-202P-201ENST00000515998 96 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 Y_RNA.693-201ENST00000516641 110 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC5.12□□□□□ -1.59
COL6A1P12109 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC5.12□□□□□ -1.59
COL6A1P12109 CASP1-212ENST00000531166 300 ntTSL 5 BASIC5.12□□□□□ -1.59
COL6A1P12109 HYKK-203ENST00000563233 734 ntTSL 2 BASIC5.12□□□□□ -1.59
COL6A1P12109 MIR5186-201ENST00000577504 120 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC5.12□□□□□ -1.59
COL6A1P12109 TPMTP1-201ENST00000592307 737 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 AC008687.2-201ENST00000597865 520 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 AC245014.2-201ENST00000603689 287 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 BNIP3P11-201ENST00000603878 563 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 AC246785.4-201ENST00000605374 287 ntBASIC5.12□□□□□ -1.59
COL6A1P12109 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC5.12□□□□□ -1.59
COL6A1P12109 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC5.12□□□□□ -1.59
COL6A1P12109 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
COL6A1P12109 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A1P12109 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A1P12109 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A1P12109 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A1P12109 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC5.12□□□□□ -1.59
COL6A1P12109 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
COL6A1P12109 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A1P12109 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL6A1P12109 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.11□□□□□ -1.59
COL6A1P12109 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL6A1P12109 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
COL6A1P12109 PNPT1P2-201ENST00000456768 2050 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 AC011978.2-201ENST00000569835 2054 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
COL6A1P12109 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL6A1P12109 OR11H4-201ENST00000315409 1082 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 RNU1-132P-201ENST00000364300 164 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
COL6A1P12109 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
COL6A1P12109 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
COL6A1P12109 RN7SKP266-201ENST00000410232 287 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC5.11□□□□□ -1.59
COL6A1P12109 USP9YP36-201ENST00000424581 829 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 AC104850.1-201ENST00000435940 476 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 RPL35AP21-201ENST00000437667 333 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 LSM1P1-201ENST00000438629 273 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 CALM1P1-201ENST00000442082 433 ntBASIC5.11□□□□□ -1.59
COL6A1P12109 RPS26P56-201ENST00000444468 240 ntBASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms