Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 MTND3P12-201ENST00000559068 328 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AC020914.6-201ENST00000594327 272 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AL133507.1-201ENST00000605269 557 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 MIR6748-201ENST00000610433 71 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 uc_338.32-201ENST00000615087 172 ntBASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC4.04□□□□□ -1.76
LIMA1Q9UHB6 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 RNU6-335P-201ENST00000364563 113 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 SNORA70C-201ENST00000384538 135 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 RNU6-952P-201ENST00000391164 108 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 CYCSP45-201ENST00000402289 315 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 SNORA3.3-201ENST00000408712 125 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 PTP4A1P5-201ENST00000420305 455 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 AC007742.1-201ENST00000425789 329 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 AC016712.1-201ENST00000431088 378 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 ELOCP26-201ENST00000436067 329 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 snoU109.4-201ENST00000458953 143 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 AC106872.2-201ENST00000494303 480 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 IGHV3-32-201ENST00000519182 355 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 TOMM20P2-201ENST00000540082 421 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 AC010928.3-201ENST00000587712 541 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 VN1R92P-201ENST00000598511 928 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 SNRPGP15-201ENST00000600149 222 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 RNU1-30P-201ENST00000606575 163 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 FP236240.3-201ENST00000623061 327 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 AC138649.5-201ENST00000637456 137 ntBASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIMA1Q9UHB6 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.03□□□□□ -1.77
LIMA1Q9UHB6 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.03□□□□□ -1.77
LIMA1Q9UHB6 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 RNU6-1249P-201ENST00000363237 111 ntBASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 MTCO2P5-201ENST00000422621 426 ntBASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 AC011233.1-201ENST00000422812 283 ntBASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 OR8F1P-201ENST00000425243 930 ntBASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 AL035407.1-201ENST00000429211 571 ntBASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 AL591503.2-201ENST00000442314 1005 ntBASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 MTND5P2-201ENST00000442927 1142 ntBASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 SETD6P1-201ENST00000444575 317 ntBASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 AL162151.2-201ENST00000448875 158 ntBASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 BX322784.1-201ENST00000455793 1077 ntBASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 AP001992.1-205ENST00000462248 379 ntBASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 RPL31P50-201ENST00000471002 296 ntBASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 NDUFA5P9-201ENST00000472609 340 ntBASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 RN7SL323P-201ENST00000494712 295 ntBASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 FCF1P3-201ENST00000496394 590 ntBASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 AC078918.1-201ENST00000498515 228 ntBASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 AC006390.1-201ENST00000508068 283 ntBASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 MTCYBP43-201ENST00000513621 740 ntBASIC4.02□□□□□ -1.77
LIMA1Q9UHB6 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms