Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 BNIP3P40-201ENST00000596017 556 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 MIR6075-201ENST00000620782 95 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AC112200.1-201ENST00000625015 234 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 UGP2-231ENST00000627474 264 ntTSL 5 BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 AL079305.1-201ENST00000623159 3008 ntBASIC3.41□□□□□ -1.86
DDX28Q9NUL7 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
DDX28Q9NUL7 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
DDX28Q9NUL7 AC244517.1-201ENST00000606030 2086 ntBASIC3.4□□□□□ -1.86
DDX28Q9NUL7 AP001350.1-201ENST00000601906 1524 ntBASIC3.4□□□□□ -1.86
DDX28Q9NUL7 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.4□□□□□ -1.86
DDX28Q9NUL7 ZNF29P-201ENST00000225587 168 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
DDX28Q9NUL7 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.4□□□□□ -1.87
DDX28Q9NUL7 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
DDX28Q9NUL7 Y_RNA.408-201ENST00000383987 102 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 RNU6-1181P-201ENST00000384191 106 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 RNU6-878P-201ENST00000384578 110 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 RNA5SP171-201ENST00000391071 115 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
DDX28Q9NUL7 RNA5SP80-201ENST00000410475 111 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 CRYBB2P1-203ENST00000415709 538 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 RPS7P15-201ENST00000415804 584 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AL050321.1-201ENST00000432363 400 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
DDX28Q9NUL7 HIGD1AP11-201ENST00000438361 280 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.4□□□□□ -1.87
DDX28Q9NUL7 RPL23AP76-201ENST00000441860 458 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AL009048.1-201ENST00000450437 298 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.4□□□□□ -1.87
DDX28Q9NUL7 MRPS31P2-201ENST00000451581 518 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 RPS24P6-201ENST00000452670 400 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AL445669.2-201ENST00000454425 421 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 snoU13.24-201ENST00000458998 104 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AC091564.1-201ENST00000464563 479 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AC021146.5-201ENST00000503544 545 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 RN7SKP289-201ENST00000517244 295 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.4□□□□□ -1.87
DDX28Q9NUL7 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
DDX28Q9NUL7 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.4□□□□□ -1.87
DDX28Q9NUL7 UBE2NP1-201ENST00000545592 458 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 EEF1B2P4-201ENST00000551398 348 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AL132857.1-201ENST00000555180 708 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.4□□□□□ -1.87
DDX28Q9NUL7 HSPE1P3-201ENST00000559254 309 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 MIR3944-201ENST00000581277 108 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AC245036.5-201ENST00000596330 847 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AC128687.1-201ENST00000605304 619 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AC106052.1-201ENST00000608029 497 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AC006023.2-201ENST00000609916 167 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AC006963.1-201ENST00000624003 1052 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
DDX28Q9NUL7 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.4□□□□□ -1.87
DDX28Q9NUL7 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 AL136164.4-201ENST00000625013 2135 ntBASIC3.4□□□□□ -1.87
DDX28Q9NUL7 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
DDX28Q9NUL7 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 AC004925.1-201ENST00000624256 2706 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 RNA5SP235-201ENST00000365411 114 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 RNU4-6P-201ENST00000410804 122 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 RAD23BP2-201ENST00000416003 1207 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 AC017079.2-201ENST00000416102 485 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 HMGN2P20-201ENST00000437531 273 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 AL358232.1-201ENST00000448030 501 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 AC098824.1-201ENST00000453565 980 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 OFD1P7Y-201ENST00000454643 1155 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 AC092155.2-201ENST00000454675 477 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 RPL7P15-201ENST00000461190 712 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 HMGB1P25-201ENST00000468402 607 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 ACTG1P13-201ENST00000486987 1043 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 PCBP2P3-201ENST00000509726 843 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 AC026412.2-201ENST00000512270 1075 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 AC104986.1-201ENST00000517978 436 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 OR4P1P-201ENST00000530808 1136 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 SLC2A13P1-201ENST00000531560 322 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 OR4T1P-201ENST00000554933 911 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 AC037471.2-201ENST00000564941 598 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 MIR4637-201ENST00000582405 84 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 AP001269.3-201ENST00000588718 329 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 AC011816.2-201ENST00000607089 556 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms