Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNA5SP200-201ENST00000516360 103 ntBASIC3.71□□□□□ -1.82
CUX1P39880 PDCD5P1-201ENST00000543528 309 ntBASIC3.71□□□□□ -1.82
CUX1P39880 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.71□□□□□ -1.82
CUX1P39880 AC105137.2-201ENST00000569073 466 ntBASIC3.71□□□□□ -1.82
CUX1P39880 MIR6733-201ENST00000635723 61 ntBASIC3.71□□□□□ -1.82
CUX1P39880 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CUX1P39880 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.71□□□□□ -1.82
CUX1P39880 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CUX1P39880 MTND5P28-201ENST00000438005 1594 ntBASIC3.71□□□□□ -1.82
CUX1P39880 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
CUX1P39880 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CUX1P39880 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CUX1P39880 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
CUX1P39880 Y_RNA.269-201ENST00000364685 89 ntBASIC3.7□□□□□ -1.82
CUX1P39880 SNORA17.3-201ENST00000391159 129 ntBASIC3.7□□□□□ -1.82
CUX1P39880 AC093151.1-201ENST00000427711 313 ntBASIC3.7□□□□□ -1.82
CUX1P39880 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.7□□□□□ -1.82
CUX1P39880 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.7□□□□□ -1.82
CUX1P39880 RNU6ATAC9P-201ENST00000516210 116 ntBASIC3.7□□□□□ -1.82
CUX1P39880 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.7□□□□□ -1.82
CUX1P39880 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC3.7□□□□□ -1.82
CUX1P39880 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
CUX1P39880 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
CUX1P39880 OR5AQ1P-203ENST00000641818 1529 ntBASIC3.7□□□□□ -1.82
CUX1P39880 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
CUX1P39880 AL512430.2-201ENST00000406786 339 ntBASIC3.7□□□□□ -1.82
CUX1P39880 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC3.7□□□□□ -1.82
CUX1P39880 AP000926.3-201ENST00000497201 299 ntBASIC3.7□□□□□ -1.82
CUX1P39880 AC093331.1-201ENST00000521474 169 ntBASIC3.7□□□□□ -1.82
CUX1P39880 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC3.7□□□□□ -1.82
CUX1P39880 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.7□□□□□ -1.82
CUX1P39880 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.7□□□□□ -1.82
CUX1P39880 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.7□□□□□ -1.82
CUX1P39880 AC093591.3-201ENST00000634516 308 ntBASIC3.7□□□□□ -1.82
CUX1P39880 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC3.7□□□□□ -1.82
CUX1P39880 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CUX1P39880 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
CUX1P39880 FRG1BP-201ENST00000278882 761 ntBASIC3.69□□□□□ -1.82
CUX1P39880 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
CUX1P39880 OR5H15-201ENST00000383696 930 ntBASIC3.69□□□□□ -1.82
CUX1P39880 RNU2-22P-201ENST00000411266 212 ntBASIC3.69□□□□□ -1.82
CUX1P39880 NDUFB4P5-201ENST00000415445 361 ntBASIC3.69□□□□□ -1.82
CUX1P39880 RPL31P45-201ENST00000419532 356 ntBASIC3.69□□□□□ -1.82
CUX1P39880 AL592045.1-201ENST00000429867 352 ntBASIC3.69□□□□□ -1.82
CUX1P39880 RPS27P27-201ENST00000498779 255 ntBASIC3.69□□□□□ -1.82
CUX1P39880 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.69□□□□□ -1.82
CUX1P39880 AC068339.2-201ENST00000534395 618 ntBASIC3.69□□□□□ -1.82
CUX1P39880 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.69□□□□□ -1.82
CUX1P39880 ELOCP31-201ENST00000540463 467 ntBASIC3.69□□□□□ -1.82
CUX1P39880 AL645944.1-201ENST00000603857 493 ntBASIC3.69□□□□□ -1.82
CUX1P39880 AL451074.6-201ENST00000608512 729 ntBASIC3.69□□□□□ -1.82
CUX1P39880 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CUX1P39880 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CUX1P39880 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.68□□□□□ -1.82
CUX1P39880 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CUX1P39880 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.68□□□□□ -1.82
CUX1P39880 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.68□□□□□ -1.82
CUX1P39880 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CUX1P39880 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.68□□□□□ -1.82
CUX1P39880 RNU6-1159P-201ENST00000362933 107 ntBASIC3.68□□□□□ -1.82
CUX1P39880 AC019155.1-201ENST00000382242 574 ntBASIC3.68□□□□□ -1.82
CUX1P39880 CYCSP49-201ENST00000420810 319 ntBASIC3.68□□□□□ -1.82
CUX1P39880 AL121882.1-201ENST00000422893 417 ntBASIC3.68□□□□□ -1.82
CUX1P39880 GSTA11P-201ENST00000452866 669 ntBASIC3.68□□□□□ -1.82
CUX1P39880 RNU6-295P-201ENST00000516901 104 ntBASIC3.68□□□□□ -1.82
CUX1P39880 AC025260.1-201ENST00000548858 430 ntBASIC3.68□□□□□ -1.82
CUX1P39880 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.68□□□□□ -1.82
CUX1P39880 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC3.68□□□□□ -1.82
CUX1P39880 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC3.68□□□□□ -1.82
CUX1P39880 AC002076.2-201ENST00000617362 122 ntBASIC3.68□□□□□ -1.82
CUX1P39880 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CUX1P39880 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.67□□□□□ -1.82
CUX1P39880 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.67□□□□□ -1.82
CUX1P39880 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.67□□□□□ -1.82
CUX1P39880 AL390023.1-201ENST00000428836 262 ntBASIC3.67□□□□□ -1.82
CUX1P39880 AC007677.1-201ENST00000445757 515 ntBASIC3.67□□□□□ -1.82
CUX1P39880 GAPDHP27-201ENST00000447427 1020 ntBASIC3.67□□□□□ -1.82
CUX1P39880 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.67□□□□□ -1.82
CUX1P39880 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.67□□□□□ -1.82
CUX1P39880 AL022099.1-201ENST00000604551 712 ntBASIC3.67□□□□□ -1.82
CUX1P39880 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.67□□□□□ -1.82
CUX1P39880 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CUX1P39880 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CUX1P39880 Y_RNA.595-201ENST00000410403 105 ntBASIC3.66□□□□□ -1.82
CUX1P39880 RPL23AP36-201ENST00000413895 458 ntBASIC3.66□□□□□ -1.82
CUX1P39880 AC124916.1-201ENST00000444020 547 ntBASIC3.66□□□□□ -1.82
CUX1P39880 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.66□□□□□ -1.82
CUX1P39880 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.66□□□□□ -1.82
CUX1P39880 AC245517.5-201ENST00000611529 162 ntBASIC3.66□□□□□ -1.82
CUX1P39880 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CUX1P39880 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.66□□□□□ -1.82
CUX1P39880 AC011460.1-201ENST00000636268 1834 ntBASIC3.66□□□□□ -1.82
CUX1P39880 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CUX1P39880 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
CUX1P39880 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.65□□□□□ -1.82
CUX1P39880 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.65□□□□□ -1.82
CUX1P39880 AC068305.1-201ENST00000497406 726 ntBASIC3.65□□□□□ -1.82
CUX1P39880 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC3.65□□□□□ -1.82
CUX1P39880 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.65□□□□□ -1.82
CUX1P39880 MTCYBP19-201ENST00000517463 1124 ntBASIC3.65□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms