Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC233981.2-201ENST00000611524 1614 ntBASIC2.38□□□□□ -2.03
COL6A3P12111 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.38□□□□□ -2.03
COL6A3P12111 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.38□□□□□ -2.03
COL6A3P12111 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
COL6A3P12111 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
COL6A3P12111 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
COL6A3P12111 MIR625-201ENST00000385047 85 ntBASIC2.37□□□□□ -2.03
COL6A3P12111 RPL21P3-201ENST00000395517 478 ntBASIC2.37□□□□□ -2.03
COL6A3P12111 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC2.37□□□□□ -2.03
COL6A3P12111 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC2.37□□□□□ -2.03
COL6A3P12111 RPS7P9-201ENST00000414704 586 ntBASIC2.37□□□□□ -2.03
COL6A3P12111 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.37□□□□□ -2.03
COL6A3P12111 LRRC37A5P-203ENST00000580181 585 ntBASIC2.37□□□□□ -2.03
COL6A3P12111 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC2.37□□□□□ -2.03
COL6A3P12111 MIR6895-201ENST00000613497 78 ntBASIC2.37□□□□□ -2.03
COL6A3P12111 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC2.37□□□□□ -2.03
COL6A3P12111 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
COL6A3P12111 MTND5P19-201ENST00000424872 1794 ntBASIC2.37□□□□□ -2.03
COL6A3P12111 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
COL6A3P12111 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC2.37□□□□□ -2.03
COL6A3P12111 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.37□□□□□ -2.03
COL6A3P12111 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
COL6A3P12111 FABP5P12-201ENST00000515543 389 ntBASIC2.37□□□□□ -2.03
COL6A3P12111 AL078603.1-201ENST00000603824 313 ntBASIC2.37□□□□□ -2.03
COL6A3P12111 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
COL6A3P12111 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.37□□□□□ -2.03
COL6A3P12111 Y_RNA.36-201ENST00000362602 112 ntBASIC2.37□□□□□ -2.03
COL6A3P12111 RN7SKP285-201ENST00000410137 318 ntBASIC2.37□□□□□ -2.03
COL6A3P12111 AC002553.2-201ENST00000453217 340 ntBASIC2.37□□□□□ -2.03
COL6A3P12111 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.37□□□□□ -2.03
COL6A3P12111 AC068339.2-201ENST00000534395 618 ntBASIC2.37□□□□□ -2.03
COL6A3P12111 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
COL6A3P12111 CDC27P2-201ENST00000425026 1922 ntBASIC2.36□□□□□ -2.03
COL6A3P12111 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL6A3P12111 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
COL6A3P12111 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
COL6A3P12111 RNU6-356P-201ENST00000384140 107 ntBASIC2.36□□□□□ -2.03
COL6A3P12111 RPL31P12-201ENST00000422587 358 ntBASIC2.36□□□□□ -2.03
COL6A3P12111 MLLT10P2-201ENST00000506434 249 ntBASIC2.36□□□□□ -2.03
COL6A3P12111 CCNHP1-201ENST00000513311 678 ntBASIC2.36□□□□□ -2.03
COL6A3P12111 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC2.36□□□□□ -2.03
COL6A3P12111 AF127577.6-201ENST00000623352 2191 ntBASIC2.36□□□□□ -2.03
COL6A3P12111 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
COL6A3P12111 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
COL6A3P12111 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
COL6A3P12111 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.36□□□□□ -2.03
COL6A3P12111 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL6A3P12111 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL6A3P12111 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.36□□□□□ -2.03
COL6A3P12111 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
COL6A3P12111 Y_RNA.30-201ENST00000362572 97 ntBASIC2.36□□□□□ -2.03
COL6A3P12111 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL6A3P12111 NCSTNP1-201ENST00000406229 144 ntBASIC2.36□□□□□ -2.03
COL6A3P12111 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.36□□□□□ -2.03
COL6A3P12111 AC005951.1-201ENST00000576706 485 ntBASIC2.36□□□□□ -2.03
COL6A3P12111 AL359198.2-201ENST00000611836 194 ntBASIC2.36□□□□□ -2.03
COL6A3P12111 AC078899.5-201ENST00000612475 178 ntBASIC2.36□□□□□ -2.03
COL6A3P12111 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL6A3P12111 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
COL6A3P12111 RNU1-57P-201ENST00000384491 166 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 RPL23AP48-201ENST00000406913 488 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 AL583834.1-201ENST00000406943 343 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC2.35□□□□□ -2.03
COL6A3P12111 AC092155.2-201ENST00000454675 477 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 SNORD13-201ENST00000459299 104 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 VWA8P1-201ENST00000510889 176 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 AC091953.2-201ENST00000623979 160 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.35□□□□□ -2.03
COL6A3P12111 CRYM-AS1-204ENST00000637983 556 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
COL6A3P12111 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC2.35□□□□□ -2.03
COL6A3P12111 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
COL6A3P12111 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC2.35□□□□□ -2.03
COL6A3P12111 MIR221-201ENST00000385135 110 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 RN7SL75P-201ENST00000461926 281 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 MTCYBP20-201ENST00000524239 1129 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
COL6A3P12111 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
COL6A3P12111 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
COL6A3P12111 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.35□□□□□ -2.03
COL6A3P12111 EIF5P1-201ENST00000400019 1231 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 RNA5SP296-201ENST00000410523 111 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC2.35□□□□□ -2.03
COL6A3P12111 RPS15AP28-201ENST00000435088 386 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 AC090543.1-201ENST00000492168 485 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC2.35□□□□□ -2.03
COL6A3P12111 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC2.35□□□□□ -2.03
COL6A3P12111 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC2.35□□□□□ -2.03
COL6A3P12111 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC2.35□□□□□ -2.03
COL6A3P12111 HMGN2P47-201ENST00000559378 272 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC2.35□□□□□ -2.03
COL6A3P12111 AC025946.2-201ENST00000603398 234 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 AP005137.2-201ENST00000609238 400 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 AL591516.1-201ENST00000611326 274 ntBASIC2.35□□□□□ -2.03
COL6A3P12111 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.34□□□□□ -2.03
COL6A3P12111 PHKBP1-201ENST00000450951 1951 ntBASIC2.34□□□□□ -2.03
COL6A3P12111 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
COL6A3P12111 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC2.34□□□□□ -2.03
COL6A3P12111 FABP5P13-201ENST00000452144 328 ntBASIC2.34□□□□□ -2.03
COL6A3P12111 AC017007.3-201ENST00000479865 435 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms