Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXC11O43248 HMGN2P7-201ENST00000456186 273 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 snoU13.24-201ENST00000458998 104 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 AP002812.1-201ENST00000495378 474 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 SLC25A15P5-201ENST00000508033 253 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 AC004062.1-201ENST00000509926 645 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXC11O43248 RNU6-1095P-201ENST00000516148 108 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXC11O43248 AC018630.1-201ENST00000541376 925 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.17□□□□□ -1.74
HOXC11O43248 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXC11O43248 AC120057.2-201ENST00000571520 271 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 AC136618.2-201ENST00000575091 400 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 AL353997.4-201ENST00000586196 166 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 AC114878.2-201ENST00000604863 1251 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 AC018714.1-201ENST00000605028 208 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 AL365503.1-201ENST00000605247 905 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 AL360219.1-201ENST00000610230 366 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 AL359715.5-201ENST00000623431 443 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXC11O43248 USP8P1-201ENST00000494673 3183 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.17□□□□□ -1.74
HOXC11O43248 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXC11O43248 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.17□□□□□ -1.74
HOXC11O43248 NF1-214ENST00000490416 1329 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXC11O43248 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXC11O43248 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXC11O43248 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXC11O43248 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXC11O43248 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXC11O43248 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
HOXC11O43248 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXC11O43248 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXC11O43248 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
HOXC11O43248 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
HOXC11O43248 AL359837.1-201ENST00000381357 287 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 RNU6-1074P-201ENST00000383995 104 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 RPS23P10-201ENST00000416185 486 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 AL358472.1-201ENST00000431295 329 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.16□□□□□ -1.74
HOXC11O43248 AL117351.1-201ENST00000438864 766 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 AL121871.1-201ENST00000443413 436 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXC11O43248 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXC11O43248 MTCO1P27-201ENST00000448269 226 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXC11O43248 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC4.16□□□□□ -1.74
HOXC11O43248 AL133217.1-201ENST00000450980 425 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 RPS24P6-201ENST00000452670 400 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 ART2BP-201ENST00000453501 499 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.16□□□□□ -1.74
HOXC11O43248 RPS26P15-201ENST00000488067 348 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 AP001025.2-201ENST00000490908 477 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 AC106872.3-201ENST00000495104 446 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC4.16□□□□□ -1.74
HOXC11O43248 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXC11O43248 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXC11O43248 SNORA67.7-201ENST00000516664 135 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXC11O43248 AC023632.4-201ENST00000517783 191 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 OR5AP1P-201ENST00000529730 940 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXC11O43248 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXC11O43248 AC007954.1-201ENST00000554198 494 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 HSPE1P5-201ENST00000561489 272 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.16□□□□□ -1.74
HOXC11O43248 AC141257.3-201ENST00000572906 215 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 AC025627.2-201ENST00000576220 160 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXC11O43248 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 AL592436.1-201ENST00000605135 558 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 AC007671.2-201ENST00000637344 619 ntBASIC4.16□□□□□ -1.74
HOXC11O43248 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.16□□□□□ -1.74
HOXC11O43248 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
HOXC11O43248 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXC11O43248 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
HOXC11O43248 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
HOXC11O43248 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
HOXC11O43248 AL133383.2-201ENST00000622958 2336 ntBASIC4.15□□□□□ -1.74
HOXC11O43248 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
HOXC11O43248 AC067945.1-201ENST00000342609 618 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HOXC11O43248 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 RNU6-97P-201ENST00000363387 104 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 Y_RNA.234-201ENST00000364409 97 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 RNU6-343P-201ENST00000364709 104 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 RNU6-213P-201ENST00000384051 104 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 MIR23B-201ENST00000384832 97 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 AL356421.1-201ENST00000403255 413 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 MOB4-205ENST00000409916 829 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXC11O43248 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXC11O43248 OR1AA1P-201ENST00000419597 916 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXC11O43248 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXC11O43248 AC007389.2-201ENST00000434630 306 ntBASIC4.15□□□□□ -1.75
HOXC11O43248 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms