Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC022960.2-201ENST00000616300 666 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 Y_RNA.178-201ENST00000363832 102 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 AMD1P2-201ENST00000412936 992 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 MTCO2P17-201ENST00000424336 677 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 AL606490.7-201ENST00000433136 191 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
VPS13AQ96RL7 AC011037.1-201ENST00000483964 558 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 AC135721.1-201ENST00000497954 479 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.2□□□□□ -2.06
VPS13AQ96RL7 AC083760.1-201ENST00000589621 670 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 AC103710.1-201ENST00000610003 901 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 AC078899.5-201ENST00000612475 178 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 AC004825.2-201ENST00000616634 455 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
VPS13AQ96RL7 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
VPS13AQ96RL7 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
VPS13AQ96RL7 RNA5SP383-201ENST00000362934 120 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 RPL31P1-201ENST00000398116 372 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 RPL23AP48-201ENST00000406913 488 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 RNU2-17P-201ENST00000410290 190 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 AC098826.1-201ENST00000433943 471 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 MRPL50P4-201ENST00000446432 475 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 AC072039.1-201ENST00000477611 581 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 NPM1P35-201ENST00000533043 868 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 ELOCP31-201ENST00000540463 467 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.2□□□□□ -2.06
VPS13AQ96RL7 MIR3199-1-201ENST00000582434 88 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.2□□□□□ -2.06
VPS13AQ96RL7 AC110741.2-201ENST00000605278 268 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.2□□□□□ -2.06
VPS13AQ96RL7 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC2.2□□□□□ -2.06
VPS13AQ96RL7 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.2□□□□□ -2.06
VPS13AQ96RL7 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.19□□□□□ -2.06
VPS13AQ96RL7 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.19□□□□□ -2.06
VPS13AQ96RL7 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
VPS13AQ96RL7 EPGN-201ENST00000332112 847 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
VPS13AQ96RL7 MIR137-201ENST00000385223 102 ntBASIC2.19□□□□□ -2.06
VPS13AQ96RL7 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
VPS13AQ96RL7 SNORA11.4-201ENST00000408823 129 ntBASIC2.19□□□□□ -2.06
VPS13AQ96RL7 AC093392.2-201ENST00000450682 337 ntBASIC2.19□□□□□ -2.06
VPS13AQ96RL7 AC007395.1-201ENST00000451333 677 ntBASIC2.19□□□□□ -2.06
VPS13AQ96RL7 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC2.19□□□□□ -2.06
VPS13AQ96RL7 AC093278.1-201ENST00000494700 600 ntBASIC2.19□□□□□ -2.06
VPS13AQ96RL7 CCNHP1-201ENST00000513311 678 ntBASIC2.19□□□□□ -2.06
VPS13AQ96RL7 VN1R80P-201ENST00000597126 338 ntBASIC2.19□□□□□ -2.06
VPS13AQ96RL7 AL020991.1-201ENST00000612314 373 ntBASIC2.19□□□□□ -2.06
VPS13AQ96RL7 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.19□□□□□ -2.06
VPS13AQ96RL7 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
VPS13AQ96RL7 SNORA25.6-201ENST00000364121 118 ntBASIC2.19□□□□□ -2.06
VPS13AQ96RL7 AL162578.1-201ENST00000406202 378 ntBASIC2.19□□□□□ -2.06
VPS13AQ96RL7 AC105402.2-201ENST00000438503 358 ntBASIC2.19□□□□□ -2.06
VPS13AQ96RL7 RPL23AP58-201ENST00000440453 469 ntBASIC2.19□□□□□ -2.06
VPS13AQ96RL7 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC2.19□□□□□ -2.06
VPS13AQ96RL7 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
VPS13AQ96RL7 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
VPS13AQ96RL7 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.18□□□□□ -2.06
VPS13AQ96RL7 AC133473.1-201ENST00000455173 299 ntBASIC2.18□□□□□ -2.06
VPS13AQ96RL7 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC2.18□□□□□ -2.06
VPS13AQ96RL7 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.18□□□□□ -2.06
VPS13AQ96RL7 AP001542.2-201ENST00000593141 364 ntBASIC2.18□□□□□ -2.06
VPS13AQ96RL7 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.18□□□□□ -2.06
VPS13AQ96RL7 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
VPS13AQ96RL7 RNU1-87P-201ENST00000363727 170 ntBASIC2.18□□□□□ -2.06
VPS13AQ96RL7 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
VPS13AQ96RL7 SNORA51.11-201ENST00000384442 131 ntBASIC2.18□□□□□ -2.06
VPS13AQ96RL7 AL590004.2-201ENST00000404787 371 ntBASIC2.18□□□□□ -2.06
VPS13AQ96RL7 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC2.18□□□□□ -2.06
VPS13AQ96RL7 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC2.18□□□□□ -2.06
VPS13AQ96RL7 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC2.18□□□□□ -2.06
VPS13AQ96RL7 AC126177.3-201ENST00000551839 688 ntBASIC2.18□□□□□ -2.06
VPS13AQ96RL7 MIR4303-201ENST00000581299 66 ntBASIC2.18□□□□□ -2.06
VPS13AQ96RL7 AC095038.3-201ENST00000634439 195 ntBASIC2.18□□□□□ -2.06
VPS13AQ96RL7 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
VPS13AQ96RL7 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
VPS13AQ96RL7 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
VPS13AQ96RL7 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
VPS13AQ96RL7 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
VPS13AQ96RL7 RNY1P14-201ENST00000384426 108 ntBASIC2.18□□□□□ -2.06
VPS13AQ96RL7 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.18□□□□□ -2.06
VPS13AQ96RL7 TXNP6-201ENST00000510190 310 ntBASIC2.18□□□□□ -2.06
VPS13AQ96RL7 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC2.18□□□□□ -2.06
VPS13AQ96RL7 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.18□□□□□ -2.06
VPS13AQ96RL7 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.18□□□□□ -2.06
VPS13AQ96RL7 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
VPS13AQ96RL7 AL355379.1-201ENST00000405542 640 ntBASIC2.17□□□□□ -2.06
VPS13AQ96RL7 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS13AQ96RL7 AC126182.1-201ENST00000478134 357 ntBASIC2.17□□□□□ -2.06
VPS13AQ96RL7 AC105137.2-201ENST00000569073 466 ntBASIC2.17□□□□□ -2.06
VPS13AQ96RL7 APOOP1-201ENST00000604695 592 ntBASIC2.17□□□□□ -2.06
VPS13AQ96RL7 AC107871.2-201ENST00000612894 502 ntBASIC2.17□□□□□ -2.06
VPS13AQ96RL7 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.17□□□□□ -2.06
VPS13AQ96RL7 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
VPS13AQ96RL7 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC2.17□□□□□ -2.06
VPS13AQ96RL7 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.17□□□□□ -2.06
VPS13AQ96RL7 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC2.17□□□□□ -2.06
VPS13AQ96RL7 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
VPS13AQ96RL7 RNU6-392P-201ENST00000364926 101 ntBASIC2.17□□□□□ -2.06
VPS13AQ96RL7 RNA5SP190-201ENST00000365222 118 ntBASIC2.17□□□□□ -2.06
VPS13AQ96RL7 FABP5P13-201ENST00000452144 328 ntBASIC2.17□□□□□ -2.06
VPS13AQ96RL7 AC104090.1-201ENST00000506341 1171 ntBASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms