Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 MIR490-201ENST00000384865 128 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 MIR183-201ENST00000384958 110 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
CCDC43Q96MW1 RNU2-28P-201ENST00000410457 189 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 AC093578.1-201ENST00000415219 368 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 RPL31P12-201ENST00000422587 358 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC43Q96MW1 AC079780.1-201ENST00000428259 207 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 AL159987.2-201ENST00000432754 307 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC43Q96MW1 AC097262.1-201ENST00000452559 548 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 AC010468.1-201ENST00000461022 817 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.81□□□□□ -1.8
CCDC43Q96MW1 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC43Q96MW1 WBP1LP4-201ENST00000505043 344 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 RNU6-27P-201ENST00000516146 107 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 AC068339.2-201ENST00000534395 618 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 AC008127.2-201ENST00000549925 1075 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC43Q96MW1 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC43Q96MW1 NCAPGP2-201ENST00000557911 754 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC43Q96MW1 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC43Q96MW1 AC126365.2-201ENST00000580630 379 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC43Q96MW1 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC43Q96MW1 XIST_intron.1-201ENST00000619444 68 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC43Q96MW1 AC091925.2-201ENST00000625059 256 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 ZNF663P-202ENST00000641770 1131 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC43Q96MW1 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC43Q96MW1 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC43Q96MW1 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC43Q96MW1 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 AC116096.1-201ENST00000566804 2314 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 MIR30E-201ENST00000362104 92 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 AL035405.1-201ENST00000400795 710 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 RNU6-55P-201ENST00000411092 107 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 RNU6-954P-201ENST00000411355 107 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 BX323014.1-201ENST00000412876 237 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 AC126124.2-201ENST00000413542 321 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 MTATP6P19-201ENST00000413797 659 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 Z99755.1-201ENST00000414048 380 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 RPS7P9-201ENST00000414704 586 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 NEK4P1-201ENST00000433383 879 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 AC005019.1-201ENST00000436455 431 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 RPL7L1P8-201ENST00000469911 741 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 RPL32P34-201ENST00000486380 400 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 RNA5SP468-201ENST00000516782 93 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 AC074050.1-201ENST00000563247 211 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 MIR4276-201ENST00000584832 70 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 AC091946.2-201ENST00000606105 291 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 AC069200.1-201ENST00000609511 323 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 AC092574.1-201ENST00000609771 420 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 AC007275.1-201ENST00000621243 671 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 AL590240.3-201ENST00000621416 943 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 PLCE1P1-201ENST00000622094 305 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 AC126544.2-201ENST00000625174 749 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 AC010733.2-201ENST00000589496 5702 ntBASIC3.8□□□□□ -1.8
CCDC43Q96MW1 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC43Q96MW1 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC43Q96MW1 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC43Q96MW1 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC43Q96MW1 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC43Q96MW1 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC43Q96MW1 RNA5SP197-201ENST00000363357 119 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 SUGT1P1-201ENST00000379514 476 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 AC009237.5-201ENST00000414271 501 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC43Q96MW1 OSTCP5-201ENST00000425293 453 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 C1DP1-201ENST00000426049 402 ntBASIC3.79□□□□□ -1.8
CCDC43Q96MW1 SEPT7P5-201ENST00000434048 306 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms