Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 RNU6-1155P-201ENST00000363554 107 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 RNA5SP139-201ENST00000364340 117 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 RNU6-213P-201ENST00000384051 104 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 MIR449B-201ENST00000384995 97 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AC016769.3-201ENST00000396562 315 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 Z97055.1-201ENST00000419730 712 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 OSTCP5-201ENST00000425293 453 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AL451062.2-201ENST00000427515 271 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 MTCYBP32-201ENST00000427945 1084 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AL353705.1-201ENST00000433468 480 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AL133547.1-201ENST00000448546 220 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 RPL6P9-201ENST00000466502 859 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AC087312.1-201ENST00000471411 480 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 SNORA48.10-201ENST00000516965 160 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 RNU6-334P-201ENST00000517072 102 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 MTND1P36-201ENST00000522384 936 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AC011492.1-201ENST00000600023 315 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AL031985.2-201ENST00000600955 480 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AP000238.1-201ENST00000608759 426 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AC253576.2-201ENST00000618815 580 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AC079684.1-201ENST00000621405 437 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 CR392039.5-201ENST00000623201 510 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AL732372.2-225ENST00000642124 456 ntBASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
ZNF540Q8NDQ6 AP004289.2-201ENST00000444413 1457 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 AC058791.1-201ENST00000608412 3198 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 Y_RNA.110-201ENST00000363220 99 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 CD24P4-201ENST00000382840 243 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 MIR217-201ENST00000384817 110 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 MIR493-201ENST00000385254 89 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 MIR670-201ENST00000390142 98 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 RNA5SP424-201ENST00000390988 115 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 ATG3P1-201ENST00000419507 911 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 RPL7P30-201ENST00000420888 709 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 AL389915.1-201ENST00000422463 466 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 Z93242.1-201ENST00000427102 353 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 Z74696.2-201ENST00000436514 498 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 TBCAP1-201ENST00000436520 327 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 AC000041.1-201ENST00000439655 175 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 Z82190.1-201ENST00000454534 490 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 CYCSP53-201ENST00000455540 265 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 BTF3P5-201ENST00000457252 467 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 AC010401.1-201ENST00000463867 348 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 AC020893.1-201ENST00000502452 580 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 CBX3P3-201ENST00000508108 532 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 AC110768.1-201ENST00000509222 400 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 RNA5SP164-201ENST00000516533 110 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 NDUFA5P2-201ENST00000519723 344 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 AC113192.3-201ENST00000529152 742 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 AP003049.1-201ENST00000529418 457 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 TRAV15-201ENST00000556680 249 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 MIR3944-201ENST00000581277 108 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 BNIP3P38-201ENST00000601117 544 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 AP005137.2-201ENST00000609238 400 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 VN1R7P-201ENST00000619242 903 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 AC006249.1-201ENST00000621223 471 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 AC109454.4-201ENST00000623411 649 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 AP002371.2-201ENST00000624450 503 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 AC080188.3-201ENST00000624842 748 ntBASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
ZNF540Q8NDQ6 AC091564.4-201ENST00000533934 2194 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms