Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 AC068276.1-201ENST00000605793 379 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 OFD1P5Y-201ENST00000447585 2590 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 FAM91A3P-201ENST00000456826 2544 ntBASIC4.81□□□□□ -1.64
VPS53Q5VIR6 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
VPS53Q5VIR6 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 RNA5SP399-201ENST00000364003 117 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 RNA5SP88-201ENST00000365560 109 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 Y_RNA.517-201ENST00000384551 106 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 MIR124-3-201ENST00000384866 87 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 MTCO3P31-201ENST00000405526 789 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AC069218.2-201ENST00000411665 344 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 UBE2V1P10-201ENST00000414685 269 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 MTCO3P1-205ENST00000422088 832 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 OFD1P12Y-201ENST00000427963 1207 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 B3GNT2P1-201ENST00000434960 952 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 Z74696.2-201ENST00000436514 498 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AL592447.1-201ENST00000447592 540 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AL162151.2-201ENST00000448875 158 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 PPIAP3-201ENST00000450588 505 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 SRRM1P2-201ENST00000464531 1192 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 RPS4XP15-201ENST00000489210 795 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AL132838.2-201ENST00000492041 314 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AC018797.3-201ENST00000513388 1241 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 OR6C7P-201ENST00000547875 934 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 MTATP6P3-201ENST00000581686 676 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AC083899.3-201ENST00000603413 594 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AL596327.1-201ENST00000603629 213 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AC073968.1-201ENST00000618594 637 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AC018816.2-201ENST00000621460 353 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AL356266.1-201ENST00000623311 483 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AC025048.6-202ENST00000627667 438 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 AC018555.1-201ENST00000567548 1980 ntBASIC4.8□□□□□ -1.64
VPS53Q5VIR6 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
VPS53Q5VIR6 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS53Q5VIR6 OR5BR1P-201ENST00000524992 1330 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS53Q5VIR6 Y_RNA.3-201ENST00000362331 103 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 SNORA60-201ENST00000362396 134 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 RNU6-251P-201ENST00000363235 104 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 RNU6-374P-201ENST00000364146 108 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 RN7SKP227-201ENST00000364445 330 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 RNU6-660P-201ENST00000364566 109 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 RNU6-356P-201ENST00000384140 107 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 RNU6-1215P-201ENST00000384441 102 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 RNY3P10-201ENST00000384764 102 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS53Q5VIR6 AL691449.1-201ENST00000426570 421 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 AC096632.1-201ENST00000427395 310 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS53Q5VIR6 AL512286.1-201ENST00000439244 400 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 USP9YP29-201ENST00000445112 563 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 SLC31A1P1-201ENST00000451221 567 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 RPL26P28-201ENST00000451325 435 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 AC133473.1-201ENST00000455173 299 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS53Q5VIR6 AC146507.1-201ENST00000468335 354 ntBASIC4.79□□□□□ -1.64
VPS53Q5VIR6 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
VPS53Q5VIR6 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS53Q5VIR6 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS53Q5VIR6 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms