Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 AC009318.4-201ENST00000620496 486 ntBASIC3.17□□□□□ -1.9
CLDN9O95484 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.17□□□□□ -1.9
CLDN9O95484 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.17□□□□□ -1.9
CLDN9O95484 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
CLDN9O95484 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.16□□□□□ -1.9
CLDN9O95484 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CLDN9O95484 Y_RNA.111-201ENST00000363248 100 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 RNU6-839P-201ENST00000363347 108 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 RNU6-805P-201ENST00000365643 106 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
CLDN9O95484 DEFB109C-201ENST00000382575 264 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 DEFB109B-201ENST00000382656 264 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.16□□□□□ -1.9
CLDN9O95484 AL136133.1-201ENST00000413694 376 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 HSFY4P-201ENST00000415994 1181 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 RPS15AP6-201ENST00000420703 385 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 GTF2IP23-201ENST00000423746 351 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CLDN9O95484 MTCYBP15-201ENST00000433123 1127 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 NEK4P1-201ENST00000433383 879 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.16□□□□□ -1.9
CLDN9O95484 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.16□□□□□ -1.9
CLDN9O95484 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.16□□□□□ -1.9
CLDN9O95484 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.16□□□□□ -1.9
CLDN9O95484 AC115115.1-201ENST00000449927 248 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 PABPC1P3-201ENST00000469174 459 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 AC010301.1-201ENST00000473936 355 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 RPL23AP44-201ENST00000482216 473 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 RPL21P13-201ENST00000488305 481 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.16□□□□□ -1.9
CLDN9O95484 PHBP14-201ENST00000512887 367 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 SNORA74D-201ENST00000516404 141 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC3.16□□□□□ -1.9
CLDN9O95484 ARL2BPP5-201ENST00000523141 481 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.16□□□□□ -1.9
CLDN9O95484 CYB5AP5-201ENST00000549779 389 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 AL121603.1-201ENST00000553815 142 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.16□□□□□ -1.9
CLDN9O95484 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.16□□□□□ -1.9
CLDN9O95484 AC093519.1-201ENST00000566109 298 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.16□□□□□ -1.9
CLDN9O95484 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.16□□□□□ -1.9
CLDN9O95484 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.16□□□□□ -1.9
CLDN9O95484 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CLDN9O95484 RPAP2P1-201ENST00000603626 1168 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 AL162713.1-201ENST00000604480 262 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 RPL21P136-201ENST00000605378 396 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.16□□□□□ -1.9
CLDN9O95484 SNORA51-201ENST00000606420 132 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 AC092354.2-201ENST00000607786 514 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 AC099778.2-201ENST00000610904 211 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 AL157817.1-201ENST00000614264 790 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 AC018816.2-201ENST00000621460 353 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 AC139713.2-210ENST00000641741 992 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 AL672296.1-201ENST00000427780 2158 ntBASIC3.16□□□□□ -1.9
CLDN9O95484 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.16□□□□□ -1.9
CLDN9O95484 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.16□□□□□ -1.9
CLDN9O95484 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CLDN9O95484 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC3.16□□□□□ -1.9
CLDN9O95484 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.15□□□□□ -1.9
CLDN9O95484 Z83843.1-201ENST00000604070 3685 ntBASIC3.15□□□□□ -1.9
CLDN9O95484 MTCO1P12-201ENST00000414273 1543 ntBASIC3.15□□□□□ -1.9
CLDN9O95484 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
CLDN9O95484 RNU6-50P-201ENST00000362356 103 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 U3.11-201ENST00000364476 212 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 MIR490-201ENST00000384865 128 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 MCTS2P-201ENST00000394552 546 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 RNA5SP229-201ENST00000410809 99 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.15□□□□□ -1.91
CLDN9O95484 AL133384.1-201ENST00000412744 351 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 BX323014.1-201ENST00000412876 237 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 RPL32P35-201ENST00000415214 394 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 RPS7P15-201ENST00000415804 584 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 AC245052.5-201ENST00000416320 649 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 BOLA3P4-201ENST00000418151 400 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 AC006960.1-201ENST00000419980 153 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 RPL31P54-201ENST00000429803 370 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.15□□□□□ -1.91
CLDN9O95484 AC125238.1-201ENST00000448842 249 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC3.15□□□□□ -1.91
CLDN9O95484 snoU13.4-201ENST00000458916 104 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 AC092754.2-201ENST00000463506 460 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.15□□□□□ -1.91
CLDN9O95484 RPL7P38-201ENST00000488396 739 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 RNA5SP217-201ENST00000515959 91 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.15□□□□□ -1.91
CLDN9O95484 IGHV3-76-201ENST00000522465 295 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.15□□□□□ -1.91
CLDN9O95484 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC3.15□□□□□ -1.91
CLDN9O95484 AC007458.1-201ENST00000542812 373 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 UBE2NP1-201ENST00000545592 458 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.15□□□□□ -1.91
CLDN9O95484 AC087481.2-201ENST00000565492 330 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 MIR3124-201ENST00000582636 67 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.15□□□□□ -1.91
CLDN9O95484 AC084824.5-201ENST00000612009 413 ntBASIC3.15□□□□□ -1.91
CLDN9O95484 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CLDN9O95484 AC018755.4-201ENST00000619715 454 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms