Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AP004371.1-201ENST00000525240 214 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 AC138915.2-201ENST00000569776 97 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 RN7SL339P-201ENST00000580597 296 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 AL390838.2-201ENST00000602394 274 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 AC007687.1-201ENST00000602704 304 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 AC231759.1-201ENST00000616455 597 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 AC099654.9-201ENST00000637055 678 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 MTND2P41-201ENST00000637599 773 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 USP8P1-201ENST00000494673 3183 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 GDI2P1-201ENST00000429312 1336 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 MIR208A-201ENST00000362287 71 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 RNU6-821P-201ENST00000390995 107 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AL583834.1-201ENST00000406943 343 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 RNA5SP44-201ENST00000410446 133 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AC007435.1-201ENST00000421086 415 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AC017083.1-201ENST00000428093 483 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 ELOCP13-201ENST00000443934 329 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AC008264.1-201ENST00000447612 367 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 RPS20P24-201ENST00000457473 361 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 RPL5P24-201ENST00000463742 885 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AC119751.4-201ENST00000507498 357 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AC113347.3-201ENST00000509113 148 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 NCAPGP2-201ENST00000557911 754 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 MIR4276-201ENST00000584832 70 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AL365400.2-201ENST00000605604 902 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AP001521.1-201ENST00000609150 300 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AC005332.6-201ENST00000613178 446 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AC104763.3-201ENST00000613765 618 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 AC010608.3-201ENST00000625048 527 ntBASIC3.41□□□□□ -1.86
LHX3Q9UBR4 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.41□□□□□ -1.86
LHX3Q9UBR4 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.4□□□□□ -1.86
LHX3Q9UBR4 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.4□□□□□ -1.86
LHX3Q9UBR4 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 Y_RNA.25-201ENST00000362528 102 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 RNA5SP267-201ENST00000364893 126 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 RNU6-629P-201ENST00000384061 103 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 SNORD116-12-201ENST00000384468 92 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AC016769.3-201ENST00000396562 315 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 CYP4F29P-201ENST00000420685 446 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AC005300.1-201ENST00000428401 373 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.4□□□□□ -1.87
LHX3Q9UBR4 AC091153.1-201ENST00000466297 402 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 RPL21P131-201ENST00000497298 483 ntBASIC3.4□□□□□ -1.87
LHX3Q9UBR4 NUP58P1-201ENST00000502546 1738 ntBASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms