Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 NPM1P34-201ENST00000428821 893 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 REREP2Y-201ENST00000439103 200 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 FABP3P2-201ENST00000453169 399 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 MEMO1P3-201ENST00000459811 302 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AC097493.1-201ENST00000463958 372 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 RPL23AP71-201ENST00000470966 469 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 Y_RNA.693-201ENST00000516641 110 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 SNORA67.7-201ENST00000516664 135 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 RN7SKP283-201ENST00000517197 270 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AP005639.2-201ENST00000527592 928 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AL442663.2-201ENST00000554385 511 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AL359212.1-201ENST00000556608 614 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 RPL7P50-201ENST00000600588 727 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 NRBF2P5-201ENST00000603087 788 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 PART1_1.1-201ENST00000611761 217 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AC006133.1-201ENST00000617106 264 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 FRG1KP-201ENST00000623592 341 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AC112200.1-201ENST00000625015 234 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 MIR3662-201ENST00000637030 95 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AC008013.2-202ENST00000637965 364 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AC104260.2-201ENST00000623551 3497 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 OR51H2P-202ENST00000641424 3046 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 SNRPEP3-201ENST00000338402 276 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 Y_RNA.1-201ENST00000352915 104 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 RNU6-317P-201ENST00000384031 107 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 RNU6-809P-201ENST00000384461 107 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 RNU11-4P-201ENST00000391149 133 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 AMD1P2-201ENST00000412936 992 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 SDCBPP3-201ENST00000419629 891 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 AL513185.2-201ENST00000425543 193 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 AC008850.1-201ENST00000427546 362 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 AC002486.1-201ENST00000435098 391 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 RAD23BP3-201ENST00000454157 1152 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 AC017015.1-201ENST00000477387 286 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 RN7SL132P-201ENST00000478131 296 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 AF213884.1-201ENST00000488102 463 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 RN7SL812P-201ENST00000493791 279 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 AC106872.3-201ENST00000495104 446 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 RPS4XP18-201ENST00000495480 763 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 AC112204.1-201ENST00000502591 103 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 THAP6-203ENST00000502620 582 ntTSL 3 BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 AC099522.1-202ENST00000514718 367 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 AP003467.2-201ENST00000520175 319 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 MAL2-203ENST00000534619 578 ntTSL 4 BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 MIR544B-201ENST00000582372 78 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 NRBF2P1-201ENST00000587407 859 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 AC091905.2-201ENST00000623143 306 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 AC006378.2-201ENST00000623178 2476 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 MFSD8-242ENST00000641690 4199 ntBASIC5.69□□□□□ -1.5
USHBP1Q8N6Y0 AC006484.1-201ENST00000435086 1884 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 SNORD56.2-201ENST00000363242 71 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 Y_RNA.356-201ENST00000365475 113 ntBASIC5.68□□□□□ -1.5
USHBP1Q8N6Y0 CYCSP19-201ENST00000411715 316 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms