Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AL451074.3-201ENST00000437709 472 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 AL589765.3-201ENST00000446084 462 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 TVP23BP2-201ENST00000455082 615 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 CEACAMP4-201ENST00000457676 421 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC1.69□□□□□ -2.14
COL7A1Q02388 AL020991.1-201ENST00000612314 373 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 AC022960.2-201ENST00000616300 666 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 MFSD8-245ENST00000641743 948 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC1.69□□□□□ -2.14
COL7A1Q02388 AL109809.4-201ENST00000603520 2185 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 AL133412.1-201ENST00000380194 2992 ntBASIC1.69□□□□□ -2.14
COL7A1Q02388 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
COL7A1Q02388 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
COL7A1Q02388 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
COL7A1Q02388 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
COL7A1Q02388 RPL9P7-201ENST00000330965 580 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 RNU1-87P-201ENST00000363727 170 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 RNU6-707P-201ENST00000364647 95 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
COL7A1Q02388 AMD1P2-201ENST00000412936 992 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC1.68□□□□□ -2.14
COL7A1Q02388 AC004866.2-201ENST00000438285 481 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 ELOCP13-201ENST00000443934 329 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 AC087385.1-201ENST00000475062 312 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC1.68□□□□□ -2.14
COL7A1Q02388 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC1.68□□□□□ -2.14
COL7A1Q02388 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC1.68□□□□□ -2.14
COL7A1Q02388 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC1.68□□□□□ -2.14
COL7A1Q02388 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
COL7A1Q02388 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC1.68□□□□□ -2.14
COL7A1Q02388 AL353743.4-201ENST00000422653 1547 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 FER-202ENST00000438717 1531 ntTSL 2 BASIC1.68□□□□□ -2.14
COL7A1Q02388 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
COL7A1Q02388 AL356489.2-201ENST00000566968 3528 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
COL7A1Q02388 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC1.68□□□□□ -2.14
COL7A1Q02388 FAT1P1-201ENST00000406588 507 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 RNU2-2P-201ENST00000410396 191 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 USP9YP6-201ENST00000413550 854 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC1.68□□□□□ -2.14
COL7A1Q02388 USP9YP34-201ENST00000453983 808 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 VN1R17P-201ENST00000472048 1090 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC1.68□□□□□ -2.14
COL7A1Q02388 AF186190.1-201ENST00000517470 480 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC1.68□□□□□ -2.14
COL7A1Q02388 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC1.68□□□□□ -2.14
COL7A1Q02388 MIR3199-1-201ENST00000582434 88 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 AC061975.8-201ENST00000587058 721 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 U2.15-201ENST00000611544 191 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 U2.16-201ENST00000613119 191 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 U2.12-201ENST00000613778 191 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 U2.20-201ENST00000613956 192 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 U2.9-201ENST00000615427 191 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 U2.11-201ENST00000616345 191 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 U2.2-201ENST00000616535 191 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 U2.3-201ENST00000617785 191 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 U2.19-201ENST00000618602 191 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 RNU2-1-201ENST00000618664 191 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 U2.6-201ENST00000619225 191 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 U2.5-201ENST00000619465 191 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC1.68□□□□□ -2.14
COL7A1Q02388 U2.10-201ENST00000620268 191 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 OR11H5P-202ENST00000641612 1325 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC1.68□□□□□ -2.14
COL7A1Q02388 AC090229.1-201ENST00000590983 1609 ntBASIC1.68□□□□□ -2.14
COL7A1Q02388 RNU6-661P-201ENST00000362409 107 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 MIR1276-201ENST00000408707 83 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 AC104389.3-201ENST00000445629 235 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 AL590399.6-201ENST00000446396 307 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 ATP5J2P3-201ENST00000451550 258 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 NIPA2P2-201ENST00000496376 1083 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 AC026412.2-201ENST00000512270 1075 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 TRMT112P2-201ENST00000512910 132 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC1.67□□□□□ -2.14
COL7A1Q02388 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.67□□□□□ -2.14
COL7A1Q02388 AC008121.2-201ENST00000614647 523 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 AC131238.1-201ENST00000617135 328 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC1.67□□□□□ -2.14
COL7A1Q02388 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC1.67□□□□□ -2.14
COL7A1Q02388 OR52B1P-201ENST00000316506 909 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 Y_RNA.374-201ENST00000365606 101 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 AL512633.1-201ENST00000399931 655 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 EIF5P1-201ENST00000400019 1231 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 MIR1183-201ENST00000408856 89 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 AL451074.5-201ENST00000415894 435 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC1.67□□□□□ -2.14
COL7A1Q02388 MOB1AP2-201ENST00000446060 614 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC1.67□□□□□ -2.14
COL7A1Q02388 AP004217.1-201ENST00000480579 346 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 AC005840.1-201ENST00000498412 377 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 AC021733.2-201ENST00000518830 497 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC1.67□□□□□ -2.14
COL7A1Q02388 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC1.67□□□□□ -2.14
COL7A1Q02388 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
COL7A1Q02388 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC1.67□□□□□ -2.14
COL7A1Q02388 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC1.67□□□□□ -2.14
COL7A1Q02388 AL136964.1-201ENST00000622038 2990 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
COL7A1Q02388 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC1.67□□□□□ -2.14
COL7A1Q02388 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms