Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC2.58□□□□□ -2
COL5A1P20908 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.58□□□□□ -2
COL5A1P20908 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.58□□□□□ -2
COL5A1P20908 ZNF72P-201ENST00000425869 1908 ntBASIC2.58□□□□□ -2
COL5A1P20908 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.58□□□□□ -2
COL5A1P20908 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
COL5A1P20908 AL512283.1-201ENST00000606756 1384 ntBASIC2.58□□□□□ -2
COL5A1P20908 RNU6-1320P-201ENST00000390838 107 ntBASIC2.58□□□□□ -2
COL5A1P20908 RNU6-1269P-201ENST00000391139 107 ntBASIC2.58□□□□□ -2
COL5A1P20908 RPL5P19-201ENST00000404228 893 ntBASIC2.58□□□□□ -2
COL5A1P20908 AL589655.1-201ENST00000405398 482 ntBASIC2.58□□□□□ -2
COL5A1P20908 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.58□□□□□ -2
COL5A1P20908 MTCO1P39-201ENST00000426148 480 ntBASIC2.58□□□□□ -2
COL5A1P20908 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.58□□□□□ -2
COL5A1P20908 ELOCP6-201ENST00000429066 328 ntBASIC2.58□□□□□ -2
COL5A1P20908 AL139415.2-201ENST00000431968 163 ntBASIC2.58□□□□□ -2
COL5A1P20908 Z85994.2-201ENST00000434327 452 ntBASIC2.58□□□□□ -2
COL5A1P20908 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.58□□□□□ -2
COL5A1P20908 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
COL5A1P20908 NDUFS5P3-201ENST00000450668 321 ntBASIC2.58□□□□□ -2
COL5A1P20908 AC243772.1-201ENST00000451620 410 ntBASIC2.58□□□□□ -2
COL5A1P20908 ELOCP12-201ENST00000458706 328 ntBASIC2.58□□□□□ -2
COL5A1P20908 RNU6-599P-201ENST00000459383 107 ntBASIC2.58□□□□□ -2
COL5A1P20908 RNU6-1193P-201ENST00000459461 107 ntBASIC2.58□□□□□ -2
COL5A1P20908 RNU6-491P-201ENST00000516099 110 ntBASIC2.58□□□□□ -2
COL5A1P20908 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC2.58□□□□□ -2
COL5A1P20908 AC083760.1-201ENST00000589621 670 ntBASIC2.58□□□□□ -2
COL5A1P20908 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC2.58□□□□□ -2
COL5A1P20908 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC2.58□□□□□ -2
COL5A1P20908 AC040174.2-201ENST00000602701 465 ntBASIC2.58□□□□□ -2
COL5A1P20908 AL512506.1-201ENST00000613918 449 ntBASIC2.58□□□□□ -2
COL5A1P20908 RNU6-368P-201ENST00000620928 107 ntBASIC2.58□□□□□ -2
COL5A1P20908 RNU6-538P-201ENST00000622329 107 ntBASIC2.58□□□□□ -2
COL5A1P20908 AC067852.7-201ENST00000623270 535 ntBASIC2.58□□□□□ -2
COL5A1P20908 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC2.58□□□□□ -2
COL5A1P20908 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.58□□□□□ -2
COL5A1P20908 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC2.58□□□□□ -2
COL5A1P20908 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
COL5A1P20908 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC2.58□□□□□ -2
COL5A1P20908 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC2.57□□□□□ -2
COL5A1P20908 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL5A1P20908 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL5A1P20908 RNU6-386P-201ENST00000362650 107 ntBASIC2.57□□□□□ -2
COL5A1P20908 SNORD6-201ENST00000365444 73 ntBASIC2.57□□□□□ -2
COL5A1P20908 RNU6-1263P-201ENST00000384601 106 ntBASIC2.57□□□□□ -2
COL5A1P20908 AL590290.1-201ENST00000405336 380 ntBASIC2.57□□□□□ -2
COL5A1P20908 RPS4XP7-201ENST00000406274 780 ntBASIC2.57□□□□□ -2
COL5A1P20908 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.57□□□□□ -2
COL5A1P20908 AC009302.1-201ENST00000417147 390 ntBASIC2.57□□□□□ -2
COL5A1P20908 AL049610.1-201ENST00000423374 372 ntBASIC2.57□□□□□ -2
COL5A1P20908 MTND4LP14-201ENST00000429447 288 ntBASIC2.57□□□□□ -2
COL5A1P20908 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC2.57□□□□□ -2
COL5A1P20908 AL392003.1-201ENST00000434394 243 ntBASIC2.57□□□□□ -2
COL5A1P20908 HMGB3P10-201ENST00000434734 572 ntBASIC2.57□□□□□ -2
COL5A1P20908 RPS20P5-201ENST00000434808 360 ntBASIC2.57□□□□□ -2
COL5A1P20908 ZNF736P11Y-201ENST00000442535 1213 ntBASIC2.57□□□□□ -2
COL5A1P20908 ZNF736P12Y-201ENST00000443152 1243 ntBASIC2.57□□□□□ -2
COL5A1P20908 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.57□□□□□ -2
COL5A1P20908 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.57□□□□□ -2
COL5A1P20908 ZNF736P4Y-201ENST00000454995 1243 ntBASIC2.57□□□□□ -2
COL5A1P20908 C1DP3-201ENST00000455013 423 ntBASIC2.57□□□□□ -2
COL5A1P20908 RPL23AP31-201ENST00000456160 467 ntBASIC2.57□□□□□ -2
COL5A1P20908 AC098583.1-201ENST00000480875 255 ntBASIC2.57□□□□□ -2
COL5A1P20908 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC2.57□□□□□ -2
COL5A1P20908 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL5A1P20908 SCARNA1-201ENST00000517138 166 ntBASIC2.57□□□□□ -2
COL5A1P20908 SEC11B-201ENST00000518383 499 ntBASIC2.57□□□□□ -2
COL5A1P20908 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.57□□□□□ -2
COL5A1P20908 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC2.57□□□□□ -2
COL5A1P20908 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC2.57□□□□□ -2
COL5A1P20908 AC025811.1-201ENST00000604312 472 ntBASIC2.57□□□□□ -2
COL5A1P20908 AC090115.4-201ENST00000609970 188 ntBASIC2.57□□□□□ -2
COL5A1P20908 AL020991.1-201ENST00000612314 373 ntBASIC2.57□□□□□ -2
COL5A1P20908 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.57□□□□□ -2
COL5A1P20908 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
COL5A1P20908 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
COL5A1P20908 CUL4AP1-201ENST00000514750 1863 ntBASIC2.57□□□□□ -2
COL5A1P20908 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
COL5A1P20908 AC092593.1-201ENST00000515413 1815 ntBASIC2.57□□□□□ -2
COL5A1P20908 AC092881.1-201ENST00000638218 2733 ntBASIC2.57□□□□□ -2
COL5A1P20908 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
COL5A1P20908 RNU6-670P-201ENST00000364312 104 ntBASIC2.56□□□□□ -2
COL5A1P20908 ATF1P1-201ENST00000406040 927 ntBASIC2.56□□□□□ -2
COL5A1P20908 UBE2V1P15-201ENST00000407776 448 ntBASIC2.56□□□□□ -2
COL5A1P20908 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC2.56□□□□□ -2
COL5A1P20908 ST13P20-201ENST00000447996 1065 ntBASIC2.56□□□□□ -2
COL5A1P20908 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC2.56□□□□□ -2
COL5A1P20908 RNU7-157P-201ENST00000459600 66 ntBASIC2.56□□□□□ -2
COL5A1P20908 PCNAP1-201ENST00000505363 709 ntBASIC2.56□□□□□ -2
COL5A1P20908 AC117525.1-201ENST00000515228 503 ntBASIC2.56□□□□□ -2
COL5A1P20908 SNORA9.3-201ENST00000516383 129 ntBASIC2.56□□□□□ -2
COL5A1P20908 AC090819.1-201ENST00000523800 1111 ntBASIC2.56□□□□□ -2
COL5A1P20908 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.56□□□□□ -2
COL5A1P20908 AL391156.1-201ENST00000554965 554 ntBASIC2.56□□□□□ -2
COL5A1P20908 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC2.56□□□□□ -2
COL5A1P20908 AC012414.2-201ENST00000559474 187 ntBASIC2.56□□□□□ -2
COL5A1P20908 AL391001.1-201ENST00000602747 715 ntBASIC2.56□□□□□ -2
COL5A1P20908 AC012119.1-201ENST00000603184 222 ntBASIC2.56□□□□□ -2
COL5A1P20908 KATNBL1P5-201ENST00000605015 517 ntBASIC2.56□□□□□ -2
COL5A1P20908 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms