Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD4P09016 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
HOXD4P09016 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD4P09016 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD4P09016 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.41□□□□□ -1.86
HOXD4P09016 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC3.41□□□□□ -1.86
HOXD4P09016 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD4P09016 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD4P09016 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD4P09016 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD4P09016 RNU6-839P-201ENST00000363347 108 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 MIR183-201ENST00000384958 110 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 RSL24D1P4-201ENST00000400938 484 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXD4P09016 RAP1BP1-201ENST00000412709 553 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 AL035423.1-201ENST00000420331 213 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD4P09016 DPRXP1-201ENST00000426312 460 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD4P09016 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD4P09016 HSPD1P21-201ENST00000436541 245 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 AC093155.1-201ENST00000440164 826 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXD4P09016 Z83846.1-201ENST00000446798 265 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 AC104978.1-201ENST00000449387 391 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 AC006480.1-201ENST00000449887 378 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 ART2BP-201ENST00000453501 499 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 ATG12P2-201ENST00000456830 416 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXD4P09016 AC078785.3-201ENST00000476607 425 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 VPS26AP1-201ENST00000483197 979 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 AC106707.2-201ENST00000484182 374 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 RPS3AP22-201ENST00000488297 769 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 RPL5P23-201ENST00000496040 868 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD4P09016 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXD4P09016 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD4P09016 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXD4P09016 AC048346.1-201ENST00000510247 144 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 RNU6-1129P-201ENST00000515964 104 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 SNORA74D-201ENST00000516404 141 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 SOD1P3-201ENST00000518682 454 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD4P09016 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD4P09016 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD4P09016 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD4P09016 AP000889.1-201ENST00000530968 660 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXD4P09016 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.41□□□□□ -1.86
HOXD4P09016 AC013444.2-201ENST00000603317 787 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 AP003973.1-201ENST00000604639 691 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 AL133507.1-201ENST00000605269 557 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 AC093783.1-201ENST00000612976 329 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD4P09016 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXD4P09016 AC007490.1-201ENST00000624321 703 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXD4P09016 MIR4496-201ENST00000635896 61 ntBASIC3.41□□□□□ -1.86
HOXD4P09016 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXD4P09016 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HOXD4P09016 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD4P09016 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD4P09016 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD4P09016 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.41□□□□□ -1.86
HOXD4P09016 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HOXD4P09016 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
HOXD4P09016 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.4□□□□□ -1.86
HOXD4P09016 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.4□□□□□ -1.86
HOXD4P09016 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
HOXD4P09016 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
HOXD4P09016 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXD4P09016 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXD4P09016 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXD4P09016 RNU6-157P-201ENST00000383957 107 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 RNU6-356P-201ENST00000384140 107 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 SNORD116-2-201ENST00000384274 95 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 SNORD116-6-201ENST00000384711 96 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 MTHFD2P2-201ENST00000407725 247 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 RNA5SP80-201ENST00000410475 111 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 RNU6-272P-201ENST00000411028 104 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXD4P09016 AL161449.1-201ENST00000414531 1199 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXD4P09016 RPS15AP40-201ENST00000419621 391 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 MTND2P18-201ENST00000419962 1030 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 RPL31P12-201ENST00000422587 358 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXD4P09016 Z93242.1-201ENST00000427102 353 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 OR4F13P-201ENST00000428478 931 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 SEPT7P5-201ENST00000434048 306 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 AC096638.2-201ENST00000434965 711 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 SETP8-201ENST00000435341 628 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXD4P09016 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXD4P09016 CYCSP43-201ENST00000438233 310 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 USP9YP22-201ENST00000438971 294 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 RAB11AP1-201ENST00000442978 646 ntBASIC3.4□□□□□ -1.87
HOXD4P09016 RPL7P59-201ENST00000447700 943 ntBASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms