Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 AL389895.1-201ENST00000554127 252 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 AC006557.5-201ENST00000603126 811 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 AL159169.3-201ENST00000608871 561 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 AC008083.4-201ENST00000615076 444 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 CR381572.1-201ENST00000625098 102 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 SNORA7.2-201ENST00000364446 145 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 SNORD82-201ENST00000365530 70 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AL138880.1-201ENST00000405824 642 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 RPL23AP47-201ENST00000408017 460 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 Z75741.2-201ENST00000417272 1167 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 HSFY1P1-201ENST00000423928 1178 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AL158071.1-201ENST00000430315 461 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AC005019.1-201ENST00000436455 431 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 USP9YP22-201ENST00000438971 294 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 PRSS3P4-201ENST00000453323 162 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 RPL21P10-201ENST00000463521 490 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 RPL31P13-201ENST00000484151 370 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AC093767.1-201ENST00000504523 156 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 WBP1LP4-201ENST00000505043 344 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AC112198.1-201ENST00000505369 1220 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 PCBP2P3-201ENST00000509726 843 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AC021451.1-201ENST00000523498 1129 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 MTCYBP41-201ENST00000528913 1123 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 OR5D17P-201ENST00000531492 978 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AC008127.2-201ENST00000549925 1075 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 GTF2IP8-201ENST00000560687 584 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 BNIP3P33-201ENST00000598912 569 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 BNIP3P39-201ENST00000601077 554 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AL035411.2-201ENST00000604022 421 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 ELOCP35-201ENST00000604289 336 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AC069545.1-201ENST00000605671 358 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AC084757.4-201ENST00000616350 526 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AC010975.3-201ENST00000618727 978 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 MKKS-204ENST00000639674 192 ntBASIC3.43□□□□□ -1.86
LHX3Q9UBR4 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.43□□□□□ -1.86
LHX3Q9UBR4 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 RNU6-989P-201ENST00000362756 107 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 snoZ40.1-201ENST00000364540 72 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 RNU6-657P-201ENST00000383904 107 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 RNU6-925P-201ENST00000384629 104 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 RNVU1-14-201ENST00000384770 164 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 MIR607-201ENST00000385241 96 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 AMD1P2-201ENST00000412936 992 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 LUZP4P1-201ENST00000415420 344 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 AC112492.1-201ENST00000449607 712 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 AC097262.1-201ENST00000452559 548 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 RPL7P49-201ENST00000471402 708 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 AC092451.1-201ENST00000480211 153 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 HSPD1P15-201ENST00000505573 1122 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 RNU6-1261P-201ENST00000517194 104 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.42□□□□□ -1.86
LHX3Q9UBR4 AP001207.2-201ENST00000519490 539 ntBASIC3.42□□□□□ -1.86
LHX3Q9UBR4 AC087808.1-201ENST00000520501 361 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms