Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 Z99714.1-201ENST00000450463 807 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 RNU7-170P-201ENST00000459303 61 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 RN7SL601P-201ENST00000471221 293 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 AC048346.1-201ENST00000510247 144 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 AC005921.1-201ENST00000510589 286 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 AC104057.1-201ENST00000515547 497 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 RNU1-143P-201ENST00000516296 146 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 IGKV2D-36-201ENST00000518643 226 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 OR8K4P-201ENST00000534608 872 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 AC004024.1-201ENST00000549244 247 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 AC087897.1-201ENST00000550134 156 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 AC044913.1-201ENST00000557200 430 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 AP005137.2-201ENST00000609238 400 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 U1.23-201ENST00000610293 146 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 AC105227.2-201ENST00000615075 605 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 RNU1-68P-201ENST00000615382 146 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 U1.39-201ENST00000621562 146 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 AC091903.1-201ENST00000624322 454 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 MTND5P31-201ENST00000419366 1374 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 RNA5SP189-201ENST00000364920 115 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 HSPE1P26-201ENST00000405341 275 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 MTCO3P31-201ENST00000405526 789 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 RNA5SP107-201ENST00000411358 122 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AC007390.1-201ENST00000415722 356 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AL451062.2-201ENST00000427515 271 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 MTCYBP32-201ENST00000427945 1084 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AC114973.1-201ENST00000429057 632 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AL136097.1-201ENST00000456945 913 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AC104982.1-201ENST00000478775 574 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AL049830.2-201ENST00000480072 201 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 RNF138P1-201ENST00000502765 546 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AC008837.1-201ENST00000511513 412 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 SNORA19.3-201ENST00000516165 130 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AC023632.1-201ENST00000518463 375 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AC074051.3-201ENST00000570238 358 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AC012468.1-201ENST00000604888 430 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AL365400.2-201ENST00000605604 902 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AL583856.2-201ENST00000606298 543 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AF129408.1-201ENST00000608767 431 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 uc_338.25-201ENST00000613756 156 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AC009269.6-201ENST00000621778 588 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AC098679.5-201ENST00000624394 571 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AC004808.1-201ENST00000627671 721 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 PABPC1P7-201ENST00000413177 1513 ntBASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VPS54Q9P1Q0 SAGE4P-201ENST00000442271 3381 ntBASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 AL359893.1-201ENST00000447628 1580 ntBASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 RNU6-236P-201ENST00000363886 106 ntBASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 RPL31P2-201ENST00000413849 377 ntBASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 AC009237.5-201ENST00000414271 501 ntBASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 NPM1P13-201ENST00000452663 865 ntBASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 AL358832.1-201ENST00000497800 389 ntBASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 AC078918.1-201ENST00000498515 228 ntBASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 AC110794.1-201ENST00000505816 425 ntBASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 RNU6-885P-201ENST00000516607 104 ntBASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 OR5D17P-201ENST00000531492 978 ntBASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 AC092470.1-201ENST00000546187 132 ntBASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 BNIP3P27-201ENST00000599991 412 ntBASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 AL158050.2-201ENST00000605336 568 ntBASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 AC099654.8-201ENST00000637757 681 ntBASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms