Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC006020.1-201ENST00000420179 1854 ntBASIC3.14□□□□□ -1.91
CCDC88AQ3V6T2 MIR181A2-201ENST00000384863 110 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 RNU2-6P-201ENST00000411404 190 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 ELOCP10-201ENST00000440624 327 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 AL662791.1-201ENST00000441992 928 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 RPS4XP6-201ENST00000477670 797 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 RN7SL297P-201ENST00000483161 293 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 RPL9P33-201ENST00000484311 566 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 IGKV2-36-201ENST00000519999 223 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 ELOCP34-201ENST00000604436 327 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 AC016717.2-201ENST00000609089 5141 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 RNU6-76P-201ENST00000384060 104 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 5S_rRNA.2-201ENST00000391293 112 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 VTA1P1-201ENST00000414044 866 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 RAB9AP5-201ENST00000437794 597 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 AL592437.1-201ENST00000443781 492 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 RAB9AP2-201ENST00000443911 597 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 HMGN1P5-201ENST00000448591 263 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 AC133134.1-201ENST00000466800 359 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 GAPDHP39-201ENST00000481866 979 ntBASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC88AQ3V6T2 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 RNU6-482P-201ENST00000391068 107 ntBASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 AL359511.1-201ENST00000402970 211 ntBASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 AL031736.2-201ENST00000426573 787 ntBASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 NDUFB4P9-201ENST00000511646 388 ntBASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 RNA5SP76-201ENST00000516277 87 ntBASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 AC022069.1-201ENST00000582910 658 ntBASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 AC008277.2-201ENST00000605196 797 ntBASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.12□□□□□ -1.91
CCDC88AQ3V6T2 SNORD114-1-201ENST00000362705 72 ntBASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 GSTA12P-201ENST00000402398 508 ntBASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 AC244505.4-201ENST00000434905 287 ntBASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 SSXP5-201ENST00000443473 287 ntBASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 AL645939.1-201ENST00000453429 797 ntBASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 AC087385.1-201ENST00000475062 312 ntBASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 HAUS1P1-201ENST00000505275 832 ntBASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 OR8X1P-201ENST00000534542 869 ntBASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 AC015712.3-201ENST00000559380 164 ntBASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 MIR7111-201ENST00000619751 72 ntBASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 AL161781.1-201ENST00000354277 403 ntBASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 NPM1P35-201ENST00000533043 868 ntBASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC88AQ3V6T2 AC138915.3-201ENST00000562908 1389 ntBASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 AL021368.2-201ENST00000606125 5352 ntBASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 OR4G2P-202ENST00000641004 1759 ntBASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 Y_RNA.4-201ENST00000362333 112 ntBASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 Y_RNA.226-201ENST00000364337 114 ntBASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 RNU6-225P-201ENST00000384613 103 ntBASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 RNU6-328P-201ENST00000390887 106 ntBASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 AC099336.2-201ENST00000422457 254 ntBASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 AC092185.1-201ENST00000491371 97 ntBASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 AC111000.5-201ENST00000506559 1178 ntBASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 NPM1P52-201ENST00000518264 846 ntBASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 166.9 ms