Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.53□□□□□ -1.52
SOX4Q06945 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SOX4Q06945 MTND5P10-201ENST00000603719 1809 ntBASIC5.53□□□□□ -1.52
SOX4Q06945 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.53□□□□□ -1.52
SOX4Q06945 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
SOX4Q06945 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SOX4Q06945 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.53□□□□□ -1.52
SOX4Q06945 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.53□□□□□ -1.52
SOX4Q06945 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SOX4Q06945 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
SOX4Q06945 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
SOX4Q06945 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SOX4Q06945 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.52□□□□□ -1.53
SOX4Q06945 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.52□□□□□ -1.53
SOX4Q06945 AC107081.3-201ENST00000612715 2034 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC5.52□□□□□ -1.53
SOX4Q06945 RNU6-552P-201ENST00000362869 119 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 Y_RNA.148-201ENST00000363557 117 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 RNU6-729P-201ENST00000384399 107 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 AL078599.1-201ENST00000402075 293 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 RN7SKP235-201ENST00000410662 305 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 RPS12P24-201ENST00000412619 387 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC5.52□□□□□ -1.53
SOX4Q06945 RPL7L1P10-201ENST00000427790 463 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.52□□□□□ -1.53
SOX4Q06945 RPL19P16-201ENST00000433839 588 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 PPIAP13-201ENST00000434706 478 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC5.52□□□□□ -1.53
SOX4Q06945 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC5.52□□□□□ -1.53
SOX4Q06945 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC5.52□□□□□ -1.53
SOX4Q06945 HMGB1P15-201ENST00000453854 435 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 RPS29P15-201ENST00000458329 171 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 RNU7-66P-201ENST00000459469 62 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.52□□□□□ -1.53
SOX4Q06945 RPL23AP11-201ENST00000475260 469 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 AC126389.1-201ENST00000477436 290 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 IGLV2-34-201ENST00000490007 283 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 RN7SL591P-201ENST00000496150 292 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC5.52□□□□□ -1.53
SOX4Q06945 MTCYBP40-201ENST00000509390 1135 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 AC098591.2-201ENST00000510152 315 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC5.52□□□□□ -1.53
SOX4Q06945 RN7SKP295-201ENST00000517264 153 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC5.52□□□□□ -1.53
SOX4Q06945 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC5.52□□□□□ -1.53
SOX4Q06945 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.52□□□□□ -1.53
SOX4Q06945 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SOX4Q06945 MIR4680-201ENST00000580906 66 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC5.52□□□□□ -1.53
SOX4Q06945 AL669831.4-202ENST00000590817 238 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.52□□□□□ -1.53
SOX4Q06945 AC105254.2-201ENST00000603636 436 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 AC087783.2-201ENST00000605070 562 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 AC087385.3-201ENST00000620477 187 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 AC022418.1-201ENST00000624118 445 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SOX4Q06945 INTS6P1-201ENST00000504674 2530 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SOX4Q06945 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SOX4Q06945 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SOX4Q06945 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SOX4Q06945 ELL2P4-201ENST00000446870 1376 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SOX4Q06945 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SOX4Q06945 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SOX4Q06945 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SOX4Q06945 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.52□□□□□ -1.53
SOX4Q06945 AC125336.1-201ENST00000508893 2827 ntBASIC5.52□□□□□ -1.53
SOX4Q06945 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC5.51□□□□□ -1.53
SOX4Q06945 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SOX4Q06945 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.51□□□□□ -1.53
SOX4Q06945 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SOX4Q06945 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SOX4Q06945 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SOX4Q06945 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.51□□□□□ -1.53
SOX4Q06945 Y_RNA.22-201ENST00000362492 102 ntBASIC5.51□□□□□ -1.53
SOX4Q06945 RN7SKP95-201ENST00000362860 303 ntBASIC5.51□□□□□ -1.53
SOX4Q06945 RNA5SP428-201ENST00000365129 132 ntBASIC5.51□□□□□ -1.53
SOX4Q06945 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.51□□□□□ -1.53
SOX4Q06945 RNU6-1207P-201ENST00000384343 107 ntBASIC5.51□□□□□ -1.53
SOX4Q06945 MIR1302-3-201ENST00000408128 138 ntBASIC5.51□□□□□ -1.53
SOX4Q06945 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.51□□□□□ -1.53
SOX4Q06945 AL354868.1-201ENST00000417077 482 ntBASIC5.51□□□□□ -1.53
SOX4Q06945 ARL5AP1-201ENST00000418991 388 ntBASIC5.51□□□□□ -1.53
SOX4Q06945 Y_RNA.653-201ENST00000459091 95 ntBASIC5.51□□□□□ -1.53
SOX4Q06945 AL049714.1-201ENST00000466686 347 ntBASIC5.51□□□□□ -1.53
SOX4Q06945 MTATP8P1-201ENST00000467115 207 ntBASIC5.51□□□□□ -1.53
SOX4Q06945 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.51□□□□□ -1.53
SOX4Q06945 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC5.51□□□□□ -1.53
SOX4Q06945 RPL39P5-202ENST00000512505 151 ntBASIC5.51□□□□□ -1.53
SOX4Q06945 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.51□□□□□ -1.53
SOX4Q06945 RN7SKP24-201ENST00000515888 284 ntBASIC5.51□□□□□ -1.53
SOX4Q06945 AC009902.1-201ENST00000519351 183 ntBASIC5.51□□□□□ -1.53
SOX4Q06945 AP001922.4-201ENST00000526967 290 ntBASIC5.51□□□□□ -1.53
SOX4Q06945 AC128657.1-201ENST00000549459 145 ntBASIC5.51□□□□□ -1.53
SOX4Q06945 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.51□□□□□ -1.53
SOX4Q06945 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.51□□□□□ -1.53
SOX4Q06945 MIR5690-201ENST00000583739 73 ntBASIC5.51□□□□□ -1.53
SOX4Q06945 MIR4424-201ENST00000585257 86 ntBASIC5.51□□□□□ -1.53
SOX4Q06945 AC092807.2-201ENST00000609367 243 ntBASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 123.2 ms