Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC2.1□□□□□ -2.07
FOXA3P55318 SNHG22-203ENST00000617833 660 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 AC244100.1-202ENST00000621554 382 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC2.1□□□□□ -2.07
FOXA3P55318 AC079228.1-201ENST00000624774 1049 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 FO624990.1-201ENST00000636373 85 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
FOXA3P55318 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
FOXA3P55318 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.1□□□□□ -2.07
FOXA3P55318 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.1□□□□□ -2.07
FOXA3P55318 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
FOXA3P55318 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC2.09□□□□□ -2.07
FOXA3P55318 SNORA57.1-201ENST00000391227 145 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 AL356057.2-201ENST00000403318 432 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 GSTA8P-201ENST00000404253 637 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC2.09□□□□□ -2.07
FOXA3P55318 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.09□□□□□ -2.07
FOXA3P55318 HMGN2P31-201ENST00000432430 273 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.09□□□□□ -2.07
FOXA3P55318 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC2.09□□□□□ -2.07
FOXA3P55318 RABEPKP1-201ENST00000440529 1026 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC2.09□□□□□ -2.07
FOXA3P55318 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.09□□□□□ -2.07
FOXA3P55318 C1DP3-201ENST00000455013 423 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 AC104689.1-201ENST00000473356 768 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 C1GALT1P2-201ENST00000510813 1104 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 CCNHP1-201ENST00000513311 678 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 RPPH1-2P-201ENST00000516688 293 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 SNORA31.15-201ENST00000516771 132 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 RN7SKP272-201ENST00000516988 232 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 AC008562.1-201ENST00000521763 330 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 ERHP1-201ENST00000523006 310 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC2.09□□□□□ -2.07
FOXA3P55318 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC2.09□□□□□ -2.07
FOXA3P55318 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.09□□□□□ -2.07
FOXA3P55318 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.09□□□□□ -2.07
FOXA3P55318 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC2.09□□□□□ -2.07
FOXA3P55318 AC107954.1-201ENST00000565906 727 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.09□□□□□ -2.07
FOXA3P55318 AL160237.3-201ENST00000604114 1013 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 BX664608.1-201ENST00000610519 487 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 AC018755.4-201ENST00000619715 454 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC2.09□□□□□ -2.07
FOXA3P55318 AL121594.5-201ENST00000631724 573 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.09□□□□□ -2.07
FOXA3P55318 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
FOXA3P55318 OR5BR1P-201ENST00000524992 1330 ntBASIC2.09□□□□□ -2.08
FOXA3P55318 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.09□□□□□ -2.08
FOXA3P55318 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
FOXA3P55318 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.09□□□□□ -2.08
FOXA3P55318 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.08□□□□□ -2.08
FOXA3P55318 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
FOXA3P55318 AC096644.4-201ENST00000563417 2912 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
FOXA3P55318 AC026241.1-201ENST00000517873 2142 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
FOXA3P55318 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
FOXA3P55318 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
FOXA3P55318 RNU6-1180P-201ENST00000364935 107 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 SNORA54-201ENST00000384281 123 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 RNU6-851P-201ENST00000384565 107 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 ARF4P3-201ENST00000397387 509 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
FOXA3P55318 AC092638.1-201ENST00000411966 1275 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 LINC01881-201ENST00000416103 412 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC2.08□□□□□ -2.08
FOXA3P55318 AC073310.1-201ENST00000423226 1033 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC2.08□□□□□ -2.08
FOXA3P55318 AL160175.1-201ENST00000428124 247 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 AC091286.1-201ENST00000431233 461 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 AC091862.1-201ENST00000438016 1100 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 RPL34P26-201ENST00000445636 354 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 AC234775.1-201ENST00000454247 670 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.08□□□□□ -2.08
FOXA3P55318 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.08□□□□□ -2.08
FOXA3P55318 AC027673.1-201ENST00000456245 405 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 snoU13.4-201ENST00000458916 104 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC2.08□□□□□ -2.08
FOXA3P55318 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
FOXA3P55318 AP000852.1-201ENST00000472460 573 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 KC877373.1-201ENST00000479066 408 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
FOXA3P55318 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC2.08□□□□□ -2.08
FOXA3P55318 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC2.08□□□□□ -2.08
FOXA3P55318 AC117522.3-201ENST00000507974 584 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 IGKV3OR22-2-201ENST00000517943 313 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 OR5BN1P-201ENST00000532955 829 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC2.08□□□□□ -2.08
FOXA3P55318 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC2.08□□□□□ -2.08
FOXA3P55318 COX6CP3-201ENST00000580869 223 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 AC010615.3-201ENST00000597319 394 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 AC106791.2-201ENST00000604680 391 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 HMGB1P51-201ENST00000605166 638 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 AC024560.3-201ENST00000608482 349 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 AC135803.1-201ENST00000608748 565 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 AC117490.2-201ENST00000610042 594 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 AC140725.3-201ENST00000616193 880 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 AC068831.8-201ENST00000620171 435 ntBASIC2.08□□□□□ -2.08
FOXA3P55318 CR392039.5-201ENST00000623201 510 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms