Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
USF1P22415 AC117529.2-201ENST00000512159 2068 ntBASIC2.88□□□□□ -1.95
USF1P22415 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
USF1P22415 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
USF1P22415 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
USF1P22415 RNA5SP295-201ENST00000362655 121 ntBASIC2.88□□□□□ -1.95
USF1P22415 RNU6-921P-201ENST00000384361 107 ntBASIC2.88□□□□□ -1.95
USF1P22415 AP002784.2-201ENST00000397300 549 ntBASIC2.88□□□□□ -1.95
USF1P22415 RNU4-78P-201ENST00000410940 126 ntBASIC2.88□□□□□ -1.95
USF1P22415 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC2.88□□□□□ -1.95
USF1P22415 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC2.88□□□□□ -1.95
USF1P22415 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC2.88□□□□□ -1.95
USF1P22415 SDCBPP2-201ENST00000424643 885 ntBASIC2.88□□□□□ -1.95
USF1P22415 TRIAP1P1-201ENST00000427062 225 ntBASIC2.88□□□□□ -1.95
USF1P22415 AC006548.1-201ENST00000427470 102 ntBASIC2.88□□□□□ -1.95
USF1P22415 AL590103.1-201ENST00000434488 307 ntBASIC2.88□□□□□ -1.95
USF1P22415 RPS7P2-201ENST00000435134 607 ntBASIC2.88□□□□□ -1.95
USF1P22415 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC2.88□□□□□ -1.95
USF1P22415 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
USF1P22415 SNORA59A-201ENST00000459326 152 ntBASIC2.88□□□□□ -1.95
USF1P22415 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC2.88□□□□□ -1.95
USF1P22415 PRDX3P4-201ENST00000470828 747 ntBASIC2.88□□□□□ -1.95
USF1P22415 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC2.88□□□□□ -1.95
USF1P22415 OR5H3P-201ENST00000502817 919 ntBASIC2.88□□□□□ -1.95
USF1P22415 OR5H5P-201ENST00000503164 928 ntBASIC2.88□□□□□ -1.95
USF1P22415 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC2.88□□□□□ -1.95
USF1P22415 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
USF1P22415 AC110794.1-201ENST00000505816 425 ntBASIC2.88□□□□□ -1.95
USF1P22415 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC2.88□□□□□ -1.95
USF1P22415 PCBP2P3-201ENST00000509726 843 ntBASIC2.88□□□□□ -1.95
USF1P22415 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC2.88□□□□□ -1.95
USF1P22415 SMILR-201ENST00000533992 553 ntTSL 4 BASIC2.88□□□□□ -1.95
USF1P22415 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC2.88□□□□□ -1.95
USF1P22415 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.88□□□□□ -1.95
USF1P22415 TGIF1P1-201ENST00000558095 802 ntBASIC2.88□□□□□ -1.95
USF1P22415 AC106782.4-201ENST00000568264 210 ntBASIC2.88□□□□□ -1.95
USF1P22415 MIR5680-201ENST00000577577 84 ntBASIC2.88□□□□□ -1.95
USF1P22415 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC2.88□□□□□ -1.95
USF1P22415 AL020997.3-201ENST00000602843 359 ntBASIC2.88□□□□□ -1.95
USF1P22415 AL606834.2-201ENST00000602954 668 ntBASIC2.88□□□□□ -1.95
USF1P22415 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
USF1P22415 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
USF1P22415 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC2.88□□□□□ -1.95
USF1P22415 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC2.88□□□□□ -1.95
USF1P22415 AC098679.5-201ENST00000624394 571 ntBASIC2.88□□□□□ -1.95
USF1P22415 CR381572.1-201ENST00000625098 102 ntBASIC2.88□□□□□ -1.95
USF1P22415 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC2.88□□□□□ -1.95
USF1P22415 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC2.88□□□□□ -1.95
USF1P22415 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
USF1P22415 AC007656.2-201ENST00000624902 4547 ntBASIC2.88□□□□□ -1.95
USF1P22415 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
USF1P22415 MFSD8-233ENST00000641482 4860 ntBASIC2.88□□□□□ -1.95
USF1P22415 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC2.88□□□□□ -1.95
USF1P22415 AC068647.1-201ENST00000489539 2265 ntBASIC2.88□□□□□ -1.95
USF1P22415 MTND4P34-201ENST00000572715 1371 ntBASIC2.87□□□□□ -1.95
USF1P22415 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC2.87□□□□□ -1.95
USF1P22415 SGO1P1-201ENST00000603525 1447 ntBASIC2.87□□□□□ -1.95
USF1P22415 AC073073.2-201ENST00000609827 2578 ntBASIC2.87□□□□□ -1.95
USF1P22415 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
USF1P22415 RNVU1-3-201ENST00000364313 161 ntBASIC2.87□□□□□ -1.95
USF1P22415 MIR16-1-201ENST00000385271 89 ntBASIC2.87□□□□□ -1.95
USF1P22415 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
USF1P22415 SNORA48.5-201ENST00000391143 135 ntBASIC2.87□□□□□ -1.95
USF1P22415 AC091862.1-201ENST00000438016 1100 ntBASIC2.87□□□□□ -1.95
USF1P22415 AC074367.1-201ENST00000438685 1125 ntBASIC2.87□□□□□ -1.95
USF1P22415 AC004022.1-201ENST00000447766 1066 ntBASIC2.87□□□□□ -1.95
USF1P22415 MRPS31P2-201ENST00000451581 518 ntBASIC2.87□□□□□ -1.95
USF1P22415 CDC42P1-201ENST00000456658 548 ntBASIC2.87□□□□□ -1.95
USF1P22415 RPL6P9-201ENST00000466502 859 ntBASIC2.87□□□□□ -1.95
USF1P22415 AC010285.1-201ENST00000470580 392 ntBASIC2.87□□□□□ -1.95
USF1P22415 RN7SL594P-201ENST00000470590 287 ntBASIC2.87□□□□□ -1.95
USF1P22415 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC2.87□□□□□ -1.95
USF1P22415 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
USF1P22415 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
USF1P22415 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
USF1P22415 MTND3P24-201ENST00000506306 329 ntBASIC2.87□□□□□ -1.95
USF1P22415 AC112518.2-201ENST00000508565 425 ntBASIC2.87□□□□□ -1.95
USF1P22415 AC119751.1-201ENST00000513357 765 ntBASIC2.87□□□□□ -1.95
USF1P22415 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC2.87□□□□□ -1.95
USF1P22415 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
USF1P22415 RNU4ATAC15P-201ENST00000516415 126 ntBASIC2.87□□□□□ -1.95
USF1P22415 SNORA31.20-201ENST00000517111 133 ntBASIC2.87□□□□□ -1.95
USF1P22415 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC2.87□□□□□ -1.95
USF1P22415 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC2.87□□□□□ -1.95
USF1P22415 AC124283.4-201ENST00000581815 456 ntBASIC2.87□□□□□ -1.95
USF1P22415 MIR4276-201ENST00000584832 70 ntBASIC2.87□□□□□ -1.95
USF1P22415 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC2.87□□□□□ -1.95
USF1P22415 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC2.87□□□□□ -1.95
USF1P22415 AC133794.1-201ENST00000602731 914 ntBASIC2.87□□□□□ -1.95
USF1P22415 IGKV1OR2-6-201ENST00000603485 277 ntBASIC2.87□□□□□ -1.95
USF1P22415 AC025588.3-201ENST00000604182 274 ntBASIC2.87□□□□□ -1.95
USF1P22415 MIR8084-201ENST00000614105 89 ntBASIC2.87□□□□□ -1.95
USF1P22415 AC110801.1-201ENST00000623590 212 ntBASIC2.87□□□□□ -1.95
USF1P22415 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC2.87□□□□□ -1.95
USF1P22415 ZNF849P-201ENST00000594711 1566 ntBASIC2.87□□□□□ -1.95
USF1P22415 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC2.87□□□□□ -1.95
USF1P22415 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC2.86□□□□□ -1.95
USF1P22415 AC004925.1-201ENST00000624256 2706 ntBASIC2.86□□□□□ -1.95
USF1P22415 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC2.86□□□□□ -1.95
USF1P22415 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms