Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 MIR6766-201ENST00000622641 72 ntBASIC3.98□□□□□ -1.77
CCDC88BA6NC98 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 SNORD88.1-201ENST00000408684 91 ntBASIC3.98□□□□□ -1.77
CCDC88BA6NC98 RN7SKP32-201ENST00000410167 303 ntBASIC3.98□□□□□ -1.77
CCDC88BA6NC98 AC012498.1-201ENST00000424037 437 ntBASIC3.98□□□□□ -1.77
CCDC88BA6NC98 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 RN7SKP244-201ENST00000516513 307 ntBASIC3.98□□□□□ -1.77
CCDC88BA6NC98 MTCYBP19-201ENST00000517463 1124 ntBASIC3.98□□□□□ -1.77
CCDC88BA6NC98 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 PDCD5P1-201ENST00000543528 309 ntBASIC3.98□□□□□ -1.77
CCDC88BA6NC98 AC025260.1-201ENST00000548858 430 ntBASIC3.98□□□□□ -1.77
CCDC88BA6NC98 MIR6733-201ENST00000635723 61 ntBASIC3.98□□□□□ -1.77
CCDC88BA6NC98 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC88BA6NC98 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC88BA6NC98 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
CCDC88BA6NC98 AC234781.4-201ENST00000419384 244 ntBASIC3.97□□□□□ -1.77
CCDC88BA6NC98 AC107015.1-201ENST00000466902 747 ntBASIC3.97□□□□□ -1.77
CCDC88BA6NC98 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC88BA6NC98 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC88BA6NC98 AC093331.1-201ENST00000521474 169 ntBASIC3.97□□□□□ -1.77
CCDC88BA6NC98 NRBF2P1-201ENST00000587407 859 ntBASIC3.97□□□□□ -1.77
CCDC88BA6NC98 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CCDC88BA6NC98 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC88BA6NC98 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
CCDC88BA6NC98 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.96□□□□□ -1.77
CCDC88BA6NC98 AC019155.1-201ENST00000382242 574 ntBASIC3.96□□□□□ -1.78
CCDC88BA6NC98 MIR142-201ENST00000384835 87 ntBASIC3.96□□□□□ -1.78
CCDC88BA6NC98 MRPS33P4-201ENST00000434892 317 ntBASIC3.96□□□□□ -1.78
CCDC88BA6NC98 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC88BA6NC98 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.96□□□□□ -1.78
CCDC88BA6NC98 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC88BA6NC98 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC88BA6NC98 Y_RNA.673-201ENST00000516306 88 ntBASIC3.96□□□□□ -1.78
CCDC88BA6NC98 Y_RNA.676-201ENST00000516393 96 ntBASIC3.96□□□□□ -1.78
CCDC88BA6NC98 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.96□□□□□ -1.78
CCDC88BA6NC98 AC006116.7-201ENST00000590141 756 ntBASIC3.96□□□□□ -1.78
CCDC88BA6NC98 AC010680.4-201ENST00000605334 543 ntBASIC3.96□□□□□ -1.78
CCDC88BA6NC98 AC110994.2-201ENST00000635481 492 ntBASIC3.96□□□□□ -1.78
CCDC88BA6NC98 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC88BA6NC98 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC88BA6NC98 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC88BA6NC98 MIR21-201ENST00000362134 72 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 RNU1-91P-201ENST00000364746 163 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 CASP3-203ENST00000393588 677 ntTSL 4 BASIC3.95□□□□□ -1.78
CCDC88BA6NC98 RNU2-2P-201ENST00000410396 191 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 AL390023.1-201ENST00000428836 262 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.95□□□□□ -1.78
CCDC88BA6NC98 AC107294.3-201ENST00000609211 526 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 U2.15-201ENST00000611544 191 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 U2.16-201ENST00000613119 191 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 U2.12-201ENST00000613778 191 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 U2.20-201ENST00000613956 192 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 U2.9-201ENST00000615427 191 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 U2.11-201ENST00000616345 191 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 U2.2-201ENST00000616535 191 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 U2.3-201ENST00000617785 191 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 U2.19-201ENST00000618602 191 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 RNU2-1-201ENST00000618664 191 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 U2.6-201ENST00000619225 191 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 U2.5-201ENST00000619465 191 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 U2.10-201ENST00000620268 191 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 MIR6873-201ENST00000622788 63 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 AC097714.1-201ENST00000511272 1647 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 ZNF355P-201ENST00000427301 3216 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC88BA6NC98 PHKBP1-201ENST00000450951 1951 ntBASIC3.95□□□□□ -1.78
CCDC88BA6NC98 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
CCDC88BA6NC98 MIR221-201ENST00000385135 110 ntBASIC3.94□□□□□ -1.78
CCDC88BA6NC98 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.94□□□□□ -1.78
CCDC88BA6NC98 RANP7-201ENST00000418085 644 ntBASIC3.94□□□□□ -1.78
CCDC88BA6NC98 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC88BA6NC98 RPS27AP9-201ENST00000477681 438 ntBASIC3.94□□□□□ -1.78
CCDC88BA6NC98 AC107222.1-201ENST00000510899 637 ntBASIC3.94□□□□□ -1.78
CCDC88BA6NC98 HMGB1P41-201ENST00000520234 440 ntBASIC3.94□□□□□ -1.78
CCDC88BA6NC98 AC018630.1-201ENST00000541376 925 ntBASIC3.94□□□□□ -1.78
CCDC88BA6NC98 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC88BA6NC98 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC88BA6NC98 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
CCDC88BA6NC98 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC88BA6NC98 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC88BA6NC98 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC88BA6NC98 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC88BA6NC98 SDCBPP3-201ENST00000419629 891 ntBASIC3.93□□□□□ -1.78
CCDC88BA6NC98 HMGB1P18-201ENST00000438801 619 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 130.6 ms