Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC018462.2-201ENST00000605375 395 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 AC107871.2-201ENST00000612894 502 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 AL691477.1-201ENST00000624398 162 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 AC000095.2-202ENST00000637415 154 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 NLRP3P1-201ENST00000622303 1785 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 GABPAP-201ENST00000419271 1356 ntBASIC5.92□□□□□ -1.46
USP3Q9Y6I4 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.92□□□□□ -1.46
USP3Q9Y6I4 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 AL137003.2-201ENST00000606924 2538 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 OSBPL9P4-201ENST00000371707 1800 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 RNU6-238P-201ENST00000363313 106 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 RNU6-1284P-201ENST00000363701 100 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 Y_RNA.380-201ENST00000365663 111 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 Y_RNA.389-201ENST00000383924 113 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 RNU6-1026P-201ENST00000384465 108 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 RNU6-1109P-201ENST00000391187 107 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 AL049697.2-201ENST00000403708 294 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 MIR548I3-201ENST00000408378 149 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 MIR548I1-201ENST00000408810 149 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 RPL30P2-201ENST00000414021 291 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 AC092013.1-201ENST00000438795 332 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 FHP1-201ENST00000442741 703 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 DNAJC19P5-201ENST00000443295 316 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 AL596266.1-201ENST00000448132 400 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 RPS17P13-201ENST00000448974 407 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 AC005008.1-201ENST00000456151 612 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 RPS3AP41-201ENST00000462701 778 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 RPL22P13-201ENST00000493291 347 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 AC010350.1-201ENST00000504908 231 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 AC108078.2-201ENST00000510750 236 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 RNU6-685P-201ENST00000517088 95 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 AC092470.1-201ENST00000546187 132 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 AC025857.2-201ENST00000602711 238 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 AC020910.3-201ENST00000603701 874 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 AC104695.3-201ENST00000604052 296 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 AL355297.3-201ENST00000604082 446 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 DLEU2_5.1-201ENST00000615567 84 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 MIR6729-201ENST00000618194 65 ntBASIC5.91□□□□□ -1.46
USP3Q9Y6I4 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
USP3Q9Y6I4 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AC006206.1-201ENST00000544842 3387 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 Y_RNA.307-201ENST00000365022 117 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 RNA5SP107-201ENST00000411358 122 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AC080125.1-201ENST00000414888 684 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 BX682237.1-201ENST00000415016 335 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AC114491.1-201ENST00000416095 246 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 Z95327.1-201ENST00000446082 482 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AP002812.1-201ENST00000495378 474 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AC026801.1-201ENST00000497178 464 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AL136038.1-201ENST00000497246 351 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AC100870.1-201ENST00000522035 505 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 EIF4A2P5-201ENST00000529914 499 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AC022882.1-201ENST00000532142 501 ntBASIC5.9□□□□□ -1.46
USP3Q9Y6I4 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
USP3Q9Y6I4 AC137627.1-201ENST00000545761 289 ntBASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms