Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AC025857.2-201ENST00000602711 238 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 NANOGP3-201ENST00000605855 286 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AL136131.3-201ENST00000607600 188 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AL139099.4-201ENST00000614802 114 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 DLEU2_5.1-201ENST00000615567 84 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AC027228.2-201ENST00000567141 2154 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 RNU6-562P-201ENST00000362731 107 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 SNORD115-7-201ENST00000365306 82 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 Y_RNA.428-201ENST00000384078 102 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 SNORA51.9-201ENST00000384295 124 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 Y_RNA.493-201ENST00000384422 102 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 SNORA19-201ENST00000384737 128 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 Y_RNA.576-201ENST00000384781 102 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 RNU6-823P-201ENST00000391042 103 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 MIR548M-201ENST00000408260 86 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 RNU2-21P-201ENST00000410368 188 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 Y_RNA.594-201ENST00000410373 140 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 RNU6-1050P-201ENST00000410388 107 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 Z95327.2-201ENST00000414579 1873 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AL139095.3-201ENST00000419672 1203 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AL590632.1-201ENST00000424289 371 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AC236972.1-201ENST00000433225 199 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 SNAP23P1-201ENST00000433229 246 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 DLD-204ENST00000437604 1859 ntTSL 2 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AC127537.2-201ENST00000439258 465 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 RPL21P2-201ENST00000440049 481 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 DYNLT3P2-201ENST00000442517 295 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AC016696.1-201ENST00000446949 318 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 OR1H1P-201ENST00000448731 937 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AC005077.1-201ENST00000449226 375 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AC022034.3-201ENST00000471393 478 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 RFPL4AP5-201ENST00000514977 504 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AC136777.2-201ENST00000522979 358 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 GNAI2P1-201ENST00000541815 315 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AC005341.1-201ENST00000571086 708 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 OR1E3-201ENST00000575608 948 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AC078899.3-201ENST00000599065 212 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AC018462.2-201ENST00000605375 395 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AC116447.1-201ENST00000613153 453 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 MIR6721-201ENST00000617181 87 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AL357559.1-201ENST00000622228 274 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AC022400.9-201ENST00000623633 273 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AC067931.1-201ENST00000624190 671 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AL136313.1-201ENST00000624804 202 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 AL355834.1-201ENST00000556602 3965 ntBASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.27□□□□□ -1.57
HIF3AQ9Y2N7 MFSD8-239ENST00000641590 2479 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC025470.1-201ENST00000510053 2032 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 AC009962.1-201ENST00000567327 3813 ntBASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HIF3AQ9Y2N7 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms