Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC027644.1-201ENST00000419595 298 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AC011242.1-201ENST00000433596 1158 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AC091862.1-201ENST00000438016 1100 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AC115115.1-201ENST00000449927 248 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 RPL6P9-201ENST00000466502 859 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 RN7SL442P-201ENST00000473804 320 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 RPS4XP22-201ENST00000480755 780 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AC108078.3-201ENST00000502633 489 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 snoZ278.1-201ENST00000517059 112 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AC104417.1-201ENST00000523974 751 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 OR4G1P-201ENST00000588632 938 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 HMGN2P28-201ENST00000606102 262 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AC018754.1-201ENST00000607486 925 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AP000238.1-201ENST00000608759 426 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AC100793.4-201ENST00000613683 429 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 MIR7112-201ENST00000616126 65 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AL049777.1-201ENST00000622740 518 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AC010872.1-201ENST00000624225 675 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.71□□□□□ -1.81
VPS54Q9P1Q0 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.81
VPS54Q9P1Q0 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 RNA5SP72-201ENST00000364442 117 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 RNU6-1226P-201ENST00000384317 107 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 RNU6-298P-201ENST00000390888 96 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 PTMAP5-201ENST00000393073 333 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 RNA5SP44-201ENST00000410446 133 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 RNA5SP120-201ENST00000410900 112 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 RPS3AP9-201ENST00000417027 792 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AL158156.1-201ENST00000422509 473 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 ISCA1P2-201ENST00000438679 421 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AL591503.2-201ENST00000442314 1005 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 Z99127.3-201ENST00000448158 395 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 HMGN3P1-201ENST00000453847 193 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AC006539.3-201ENST00000454258 129 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 NF1P3-201ENST00000457709 450 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AC034236.1-201ENST00000469891 373 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 SLC25A15P5-201ENST00000508033 253 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AC104027.1-201ENST00000521887 300 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AP001207.1-201ENST00000524051 481 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 ZNF192P1-203ENST00000565888 810 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AC122134.1-202ENST00000569111 1201 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AP001542.2-201ENST00000593141 364 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AL606834.2-201ENST00000602954 668 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 SRGNP1-201ENST00000603392 451 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 RNU6-1192P-201ENST00000612197 107 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 RNU6-489P-201ENST00000618289 107 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AC103798.2-201ENST00000624292 632 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AC048347.1-201ENST00000624621 427 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AP001148.1-201ENST00000624124 2359 ntBASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS54Q9P1Q0 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 RPL7P26-201ENST00000333817 754 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 MIR34B-201ENST00000385076 84 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 SSXP10-201ENST00000402595 565 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 RPL31P12-201ENST00000422587 358 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 AC233981.1-201ENST00000423224 461 ntBASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS54Q9P1Q0 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms