Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP28Q96RU2 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP28Q96RU2 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.82□□□□□ -1.8
USP28Q96RU2 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
USP28Q96RU2 GABPAP-201ENST00000419271 1356 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
USP28Q96RU2 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
USP28Q96RU2 SNORA31-201ENST00000362607 130 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 RNU4-28P-201ENST00000364739 141 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 OR1L1-202ENST00000373686 1083 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 BX890604.2-201ENST00000427883 474 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 RPL23AP33-201ENST00000442301 452 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.82□□□□□ -1.8
USP28Q96RU2 Z77249.1-201ENST00000444622 1175 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 HMGB1P48-201ENST00000446155 598 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 RPL21P23-201ENST00000446654 460 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 PTENP1-201ENST00000447117 1215 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 BX276092.4-201ENST00000452056 248 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 MRPL35P4-201ENST00000453682 566 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC3.82□□□□□ -1.8
USP28Q96RU2 AC010468.1-201ENST00000461022 817 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC3.82□□□□□ -1.8
USP28Q96RU2 AC093534.1-201ENST00000504977 132 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 RNU1-143P-201ENST00000516296 146 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 TRMT10BP1-201ENST00000519377 943 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 MTND2P38-201ENST00000522536 667 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 AC010306.1-201ENST00000523223 1117 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.82□□□□□ -1.8
USP28Q96RU2 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.82□□□□□ -1.8
USP28Q96RU2 MIR5708-201ENST00000579723 85 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.82□□□□□ -1.8
USP28Q96RU2 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.82□□□□□ -1.8
USP28Q96RU2 AC008751.2-201ENST00000597885 980 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 AC025811.1-201ENST00000604312 472 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.82□□□□□ -1.8
USP28Q96RU2 U1.23-201ENST00000610293 146 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
USP28Q96RU2 RNU1-68P-201ENST00000615382 146 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 U1.39-201ENST00000621562 146 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
USP28Q96RU2 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.82□□□□□ -1.8
USP28Q96RU2 XPOTP1-201ENST00000443317 2398 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 AL133383.2-201ENST00000622958 2336 ntBASIC3.82□□□□□ -1.8
USP28Q96RU2 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.82□□□□□ -1.8
USP28Q96RU2 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
USP28Q96RU2 AC000367.1-201ENST00000452711 1766 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 AC119744.1-201ENST00000454746 1715 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP28Q96RU2 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
USP28Q96RU2 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP28Q96RU2 ZNF876P-202ENST00000398732 1485 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 AC004972.1-201ENST00000623934 2209 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
USP28Q96RU2 RNA5SP119-201ENST00000362715 117 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 SNORA73.2-201ENST00000364946 201 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 OR52E6-202ENST00000379946 954 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 RNU6-1293P-201ENST00000384077 107 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 SNORA40.2-201ENST00000390847 128 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
USP28Q96RU2 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.81□□□□□ -1.8
USP28Q96RU2 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.81□□□□□ -1.8
USP28Q96RU2 RPS24P7-201ENST00000416921 246 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 OR51AB1P-201ENST00000429046 620 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.81□□□□□ -1.8
USP28Q96RU2 RPL7P34-201ENST00000433316 712 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC3.81□□□□□ -1.8
USP28Q96RU2 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.81□□□□□ -1.8
USP28Q96RU2 AC233982.1-201ENST00000451247 436 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 RPL23AP44-201ENST00000482216 473 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 BOLA3P3-201ENST00000505182 232 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC3.81□□□□□ -1.8
USP28Q96RU2 RN7SKP283-201ENST00000517197 270 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC3.81□□□□□ -1.8
USP28Q96RU2 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.81□□□□□ -1.8
USP28Q96RU2 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
USP28Q96RU2 MTCO2P15-201ENST00000532655 656 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.81□□□□□ -1.8
USP28Q96RU2 AC044913.1-201ENST00000557200 430 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
USP28Q96RU2 AC010928.3-201ENST00000587712 541 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.81□□□□□ -1.8
USP28Q96RU2 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.81□□□□□ -1.8
USP28Q96RU2 AC006557.5-201ENST00000603126 811 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 NTAN1P1-201ENST00000603150 646 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 AL139344.1-201ENST00000605228 195 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 AP005137.2-201ENST00000609238 400 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 AC004908.3-201ENST00000610248 625 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 AC231759.1-201ENST00000616455 597 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 RNU6-156P-201ENST00000621869 107 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 AC243312.2-201ENST00000623340 601 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.81□□□□□ -1.8
USP28Q96RU2 AC092608.3-201ENST00000625017 386 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 AL034408.1-202ENST00000636088 415 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 AC012442.3-202ENST00000636742 206 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 AC090897.3-201ENST00000636973 1157 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.81□□□□□ -1.8
USP28Q96RU2 ZNF663P-202ENST00000641770 1131 ntBASIC3.81□□□□□ -1.8
USP28Q96RU2 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 293.3 ms