Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 MIR6715B-201ENST00000637172 77 ntBASIC4.8□□□□□ -1.64
HPS3Q969F9 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.8□□□□□ -1.64
HPS3Q969F9 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.8□□□□□ -1.64
HPS3Q969F9 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
HPS3Q969F9 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.8□□□□□ -1.64
HPS3Q969F9 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
HPS3Q969F9 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.8□□□□□ -1.64
HPS3Q969F9 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HPS3Q969F9 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HPS3Q969F9 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.79□□□□□ -1.64
HPS3Q969F9 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HPS3Q969F9 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
HPS3Q969F9 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HPS3Q969F9 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HPS3Q969F9 RNU1-108P-201ENST00000362556 161 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 RNU6-744P-201ENST00000365557 107 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 RNU6-1316P-201ENST00000384242 108 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 RNU6-339P-201ENST00000384310 107 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 RNU6-769P-201ENST00000384407 104 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC4.79□□□□□ -1.64
HPS3Q969F9 CDK8P2-201ENST00000415020 547 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 RPL18P10-201ENST00000425606 538 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC4.79□□□□□ -1.64
HPS3Q969F9 MTND1P28-201ENST00000435623 950 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC4.79□□□□□ -1.64
HPS3Q969F9 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 RPL7P52-201ENST00000449200 742 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 PDSS1P2-201ENST00000449397 678 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 ABCF2P2-201ENST00000450549 296 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 AC009963.2-201ENST00000453431 138 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC4.79□□□□□ -1.64
HPS3Q969F9 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC4.79□□□□□ -1.64
HPS3Q969F9 snoU13.8-201ENST00000458890 104 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 ARL2BPP4-201ENST00000506854 471 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC4.79□□□□□ -1.64
HPS3Q969F9 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.79□□□□□ -1.64
HPS3Q969F9 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC4.79□□□□□ -1.64
HPS3Q969F9 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.79□□□□□ -1.64
HPS3Q969F9 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC4.79□□□□□ -1.64
HPS3Q969F9 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC4.79□□□□□ -1.64
HPS3Q969F9 RN7SL176P-201ENST00000580352 264 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 AC005771.1-201ENST00000585581 349 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.79□□□□□ -1.64
HPS3Q969F9 AC079089.3-201ENST00000603094 673 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HPS3Q969F9 AL021997.2-201ENST00000615674 271 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 AC099669.2-201ENST00000616549 437 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 AC006338.2-201ENST00000616864 791 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 U73479.1-201ENST00000618062 168 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 AC009237.17-201ENST00000618111 748 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC4.79□□□□□ -1.64
HPS3Q969F9 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.79□□□□□ -1.64
HPS3Q969F9 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HPS3Q969F9 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.79□□□□□ -1.64
HPS3Q969F9 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.79□□□□□ -1.64
HPS3Q969F9 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.79□□□□□ -1.64
HPS3Q969F9 AC090229.1-201ENST00000590983 1609 ntBASIC4.79□□□□□ -1.64
HPS3Q969F9 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
HPS3Q969F9 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
HPS3Q969F9 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.78□□□□□ -1.64
HPS3Q969F9 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
HPS3Q969F9 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.78□□□□□ -1.64
HPS3Q969F9 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.78□□□□□ -1.64
HPS3Q969F9 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.78□□□□□ -1.64
HPS3Q969F9 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HPS3Q969F9 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HPS3Q969F9 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
HPS3Q969F9 RNU1-15P-201ENST00000353977 144 ntBASIC4.78□□□□□ -1.64
HPS3Q969F9 RNU1-94P-201ENST00000362627 173 ntBASIC4.78□□□□□ -1.64
HPS3Q969F9 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
HPS3Q969F9 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC4.78□□□□□ -1.64
HPS3Q969F9 RNU6-356P-201ENST00000384140 107 ntBASIC4.78□□□□□ -1.64
HPS3Q969F9 AL121834.1-202ENST00000404494 277 ntBASIC4.78□□□□□ -1.64
HPS3Q969F9 B3GALNT1P1-201ENST00000420569 975 ntBASIC4.78□□□□□ -1.64
HPS3Q969F9 RWDD4P2-201ENST00000426392 563 ntBASIC4.78□□□□□ -1.64
HPS3Q969F9 AC092641.1-201ENST00000440229 772 ntBASIC4.78□□□□□ -1.64
HPS3Q969F9 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4.78□□□□□ -1.64
HPS3Q969F9 RPL23AP33-201ENST00000442301 452 ntBASIC4.78□□□□□ -1.64
HPS3Q969F9 RPL7P36-201ENST00000444633 681 ntBASIC4.78□□□□□ -1.64
HPS3Q969F9 PHBP16-201ENST00000446318 950 ntBASIC4.78□□□□□ -1.64
HPS3Q969F9 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.78□□□□□ -1.64
HPS3Q969F9 AC146507.1-201ENST00000468335 354 ntBASIC4.78□□□□□ -1.64
HPS3Q969F9 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.78□□□□□ -1.64
HPS3Q969F9 LAMTOR3P2-201ENST00000504479 232 ntBASIC4.78□□□□□ -1.64
HPS3Q969F9 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
HPS3Q969F9 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.78□□□□□ -1.64
HPS3Q969F9 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.78□□□□□ -1.64
HPS3Q969F9 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.78□□□□□ -1.64
HPS3Q969F9 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.78□□□□□ -1.64
HPS3Q969F9 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.78□□□□□ -1.64
HPS3Q969F9 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.78□□□□□ -1.64
HPS3Q969F9 MTCYBP20-201ENST00000524239 1129 ntBASIC4.78□□□□□ -1.64
HPS3Q969F9 AC009643.1-201ENST00000532030 391 ntBASIC4.78□□□□□ -1.64
HPS3Q969F9 AP002453.2-201ENST00000533503 320 ntBASIC4.78□□□□□ -1.64
HPS3Q969F9 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC4.78□□□□□ -1.64
HPS3Q969F9 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC4.78□□□□□ -1.64
HPS3Q969F9 AGGF1P4-201ENST00000568249 801 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms