Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 UBL5P2-201ENST00000583788 219 ntBASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 MIR3670-1-201ENST00000584160 65 ntBASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 MIR3670-3-201ENST00000584855 65 ntBASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 MIR3670-4-201ENST00000612260 65 ntBASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 AC087565.3-202ENST00000642085 1603 ntBASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
CCDC112Q8NEF3 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 SNORA51.2-201ENST00000364595 132 ntBASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 RNU1-140P-201ENST00000365040 165 ntBASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 MIR592-201ENST00000384959 97 ntBASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 AL138885.1-201ENST00000405921 675 ntBASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 SNORA11.2-201ENST00000408318 127 ntBASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 RPS15AP40-201ENST00000419621 391 ntBASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 AL590399.6-201ENST00000446396 307 ntBASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 AC104629.2-201ENST00000468627 598 ntBASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 AC117440.1-201ENST00000474107 571 ntBASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 AL355836.1-201ENST00000555951 870 ntBASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 AC090616.5-202ENST00000582111 297 ntBASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 MIR3605-201ENST00000583214 100 ntBASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 AL109653.1-201ENST00000603091 248 ntBASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 MIR6864-201ENST00000617935 70 ntBASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 AL355493.4-201ENST00000618530 292 ntBASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC112Q8NEF3 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.15□□□□□ -1.9
CCDC112Q8NEF3 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 MIR422A-201ENST00000362286 90 ntBASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 SNORA9.2-201ENST00000365361 133 ntBASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 GSTA8P-201ENST00000404253 637 ntBASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 AL138880.1-201ENST00000405824 642 ntBASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 AC104332.2-201ENST00000429959 156 ntBASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 AL392003.1-201ENST00000434394 243 ntBASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 BX276092.4-201ENST00000452056 248 ntBASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 NECAP1P2-201ENST00000455668 727 ntBASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 AC090525.1-201ENST00000479116 478 ntBASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 RNA5SP341-201ENST00000516261 117 ntBASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 RNU1-103P-201ENST00000516502 125 ntBASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 IGKV2-36-201ENST00000519999 223 ntBASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 AP002404.1-201ENST00000532005 451 ntBASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 MIMT1-201ENST00000597105 1050 ntBASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 AL162574.2-201ENST00000614618 657 ntBASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 MIR4496-201ENST00000635896 61 ntBASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC112Q8NEF3 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 AC123912.3-201ENST00000600907 1367 ntBASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 RNU6-7-201ENST00000364784 107 ntBASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 RNU6-8-201ENST00000365467 107 ntBASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 OR51AB1P-201ENST00000429046 620 ntBASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 MRPL50P4-201ENST00000446432 475 ntBASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 Z75741.1-201ENST00000446793 314 ntBASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 Z99714.1-201ENST00000450463 807 ntBASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 NF1P3-201ENST00000457709 450 ntBASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 ARL4AP2-201ENST00000507378 601 ntBASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 AC005351.1-201ENST00000511152 786 ntBASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 TBCAP3-201ENST00000512475 312 ntBASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 AF279873.1-201ENST00000523393 313 ntBASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC112Q8NEF3 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms