Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC233981.1-201ENST00000423224 461 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 RWDD4P2-201ENST00000426392 563 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 RPS27AP12-201ENST00000429552 465 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC011742.1-201ENST00000431448 434 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 RPL36AP33-201ENST00000450395 310 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 USP9YP10-201ENST00000454868 628 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 RPL31P61-201ENST00000496160 376 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC107401.1-201ENST00000503426 685 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC006499.5-201ENST00000505037 514 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AF213884.2-201ENST00000510417 903 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 USP9YP5-201ENST00000511770 630 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 MTCO1P35-201ENST00000515270 228 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 RN7SKP21-201ENST00000516503 220 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 DEFB109D-201ENST00000529497 240 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 TRAV15-201ENST00000556680 249 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC093519.1-201ENST00000566109 298 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC012417.1-201ENST00000582307 1039 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC107982.3-201ENST00000584957 985 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC079089.3-201ENST00000603094 673 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC067959.1-201ENST00000604334 379 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC087752.4-201ENST00000605911 462 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC024560.3-201ENST00000608482 349 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC012360.2-201ENST00000609349 391 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 MIR6868-201ENST00000611215 58 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC025594.3-201ENST00000613068 790 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC015540.1-201ENST00000615828 501 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC026634.1-201ENST00000634369 198 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AL773545.4-201ENST00000637262 310 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AC006927.3-201ENST00000638789 384 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AL513478.4-201ENST00000641636 310 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AL356489.2-201ENST00000566968 3528 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 ATP8A2P3-201ENST00000426792 1536 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
VPS53Q5VIR6 AL136964.1-201ENST00000622038 2990 ntBASIC4.86□□□□□ -1.63
VPS53Q5VIR6 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 SNORD35B-201ENST00000363660 87 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 RNU4-91P-201ENST00000364778 135 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 HSPD1P16-201ENST00000402302 394 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 RPL31P45-201ENST00000419532 356 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 TRIM60P18-201ENST00000441518 828 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 AC114755.5-201ENST00000447760 831 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 ZNF114P1-201ENST00000453500 292 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 RPL37P6-202ENST00000464216 403 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 RPL21P103-201ENST00000479921 488 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 RAD51AP1P1-201ENST00000484195 1001 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 AC108043.1-201ENST00000512696 574 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 AC108064.1-201ENST00000513791 460 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 AC027309.2-201ENST00000520566 192 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 CENPUP2-201ENST00000555897 1186 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 AC020914.6-201ENST00000594327 272 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 AC022146.1-201ENST00000595307 847 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 AC107304.1-201ENST00000604229 296 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 AL391497.1-201ENST00000608671 547 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 AC005332.10-201ENST00000612725 619 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 ZYXP1-201ENST00000617638 118 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 MIR4727-201ENST00000622232 55 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 AC068724.3-201ENST00000625906 87 ntBASIC4.85□□□□□ -1.63
VPS53Q5VIR6 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS53Q5VIR6 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
VPS53Q5VIR6 LINC00561-201ENST00000565815 2738 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms