Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
PKNOX1P55347 RNU1-85P-201ENST00000364127 164 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 AL138880.1-201ENST00000405824 642 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 RNA5SP229-201ENST00000410809 99 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 RAB9AP3-201ENST00000412737 573 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 AL024507.1-201ENST00000412741 274 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 RPL32P35-201ENST00000415214 394 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 AC013262.1-201ENST00000426710 252 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC3.19□□□□□ -1.9
PKNOX1P55347 RPL31P54-201ENST00000429803 370 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 KCTD10P1-201ENST00000434203 625 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 HSPD1P21-201ENST00000436541 245 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 ELOCP13-201ENST00000443934 329 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.19□□□□□ -1.9
PKNOX1P55347 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.19□□□□□ -1.9
PKNOX1P55347 RAB9AP1-201ENST00000449393 573 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
PKNOX1P55347 AL136126.1-201ENST00000473603 402 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 RPS4XP13-201ENST00000483219 789 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 AC068587.1-201ENST00000483613 781 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.19□□□□□ -1.9
PKNOX1P55347 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.19□□□□□ -1.9
PKNOX1P55347 AC026414.1-201ENST00000504046 698 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 PRELID3BP5-201ENST00000508612 460 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 RNU6-885P-201ENST00000516607 104 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.19□□□□□ -1.9
PKNOX1P55347 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.19□□□□□ -1.9
PKNOX1P55347 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.19□□□□□ -1.9
PKNOX1P55347 CYB5AP5-201ENST00000549779 389 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 AC107954.1-201ENST00000565906 727 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.19□□□□□ -1.9
PKNOX1P55347 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC3.19□□□□□ -1.9
PKNOX1P55347 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.19□□□□□ -1.9
PKNOX1P55347 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.19□□□□□ -1.9
PKNOX1P55347 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC3.19□□□□□ -1.9
PKNOX1P55347 AC113368.1-201ENST00000603736 382 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 VN1R74P-201ENST00000613259 503 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 AC068722.2-201ENST00000618734 544 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.19□□□□□ -1.9
PKNOX1P55347 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.19□□□□□ -1.9
PKNOX1P55347 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC3.19□□□□□ -1.9
PKNOX1P55347 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.19□□□□□ -1.9
PKNOX1P55347 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.19□□□□□ -1.9
PKNOX1P55347 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.19□□□□□ -1.9
PKNOX1P55347 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PKNOX1P55347 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
PKNOX1P55347 ZNF734P-201ENST00000419494 1534 ntBASIC3.19□□□□□ -1.9
PKNOX1P55347 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
PKNOX1P55347 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.18□□□□□ -1.9
PKNOX1P55347 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
PKNOX1P55347 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.18□□□□□ -1.9
PKNOX1P55347 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.18□□□□□ -1.9
PKNOX1P55347 AC111188.2-201ENST00000529697 1387 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
PKNOX1P55347 RNU1-70P-201ENST00000362618 164 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 RNU6-582P-201ENST00000362989 107 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 U3.6-201ENST00000363622 211 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 RNU6-263P-201ENST00000363811 107 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 MIR218-2-201ENST00000385006 110 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 RNU6-837P-201ENST00000391056 108 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 RPL21P3-201ENST00000395517 478 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 AL445189.1-201ENST00000405722 338 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.18□□□□□ -1.9
PKNOX1P55347 RNA5SP56-201ENST00000410277 118 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 RN7SKP202-201ENST00000410439 330 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 BX842559.1-201ENST00000419615 532 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.18□□□□□ -1.9
PKNOX1P55347 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.18□□□□□ -1.9
PKNOX1P55347 MTCYBP15-201ENST00000433123 1127 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.18□□□□□ -1.9
PKNOX1P55347 AC122718.1-201ENST00000439448 744 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 AL592437.1-201ENST00000443781 492 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.18□□□□□ -1.9
PKNOX1P55347 AC146507.2-201ENST00000460608 476 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 AC091564.1-201ENST00000464563 479 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 AC093278.1-201ENST00000494700 600 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC3.18□□□□□ -1.9
PKNOX1P55347 MTCYBP37-201ENST00000510642 1133 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 RNA5SP135-201ENST00000517019 125 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC3.18□□□□□ -1.9
PKNOX1P55347 IGKV2D-19-201ENST00000523346 262 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.18□□□□□ -1.9
PKNOX1P55347 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.18□□□□□ -1.9
PKNOX1P55347 TRAV37-201ENST00000553906 342 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.18□□□□□ -1.9
PKNOX1P55347 AC010735.1-201ENST00000567305 1026 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 AC090666.1-201ENST00000578241 445 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.18□□□□□ -1.9
PKNOX1P55347 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.18□□□□□ -1.9
PKNOX1P55347 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.18□□□□□ -1.9
PKNOX1P55347 AC025588.3-201ENST00000604182 274 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 AC099785.1-201ENST00000605697 437 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 AP000238.1-201ENST00000608759 426 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 AP005137.2-201ENST00000609238 400 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 AL591516.1-201ENST00000611326 274 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PKNOX1P55347 AL157817.1-201ENST00000614264 790 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 AC006249.1-201ENST00000621223 471 ntBASIC3.18□□□□□ -1.9
PKNOX1P55347 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms