Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 HIGD1AP5-201ENST00000529959 259 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC2.12□□□□□ -2.07
FOXA3P55318 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC2.12□□□□□ -2.07
FOXA3P55318 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.12□□□□□ -2.07
FOXA3P55318 AC020895.1-201ENST00000595362 272 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 RPL23AP78-201ENST00000599928 470 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.12□□□□□ -2.07
FOXA3P55318 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
FOXA3P55318 AC005046.1-201ENST00000608515 625 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 AL136295.6-201ENST00000610486 658 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 AL162574.2-201ENST00000614618 657 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.12□□□□□ -2.07
FOXA3P55318 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
FOXA3P55318 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
FOXA3P55318 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.12□□□□□ -2.07
FOXA3P55318 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
FOXA3P55318 AC009501.3-201ENST00000605001 1352 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC2.11□□□□□ -2.07
FOXA3P55318 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.11□□□□□ -2.07
FOXA3P55318 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
FOXA3P55318 AC099654.7-201ENST00000635788 2127 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC2.11□□□□□ -2.07
FOXA3P55318 RNA5SP515-201ENST00000364570 118 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 SNORA9.2-201ENST00000365361 133 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 RNU4-31P-201ENST00000384211 141 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 RNU6-452P-201ENST00000384406 107 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 AC025750.1-201ENST00000399891 379 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 RNA5SP38-201ENST00000410750 119 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 RNU2-25P-201ENST00000411041 191 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 RPS20P25-201ENST00000412447 352 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
FOXA3P55318 AL353678.1-201ENST00000422735 741 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
FOXA3P55318 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC2.11□□□□□ -2.07
FOXA3P55318 LSM1P1-201ENST00000438629 273 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 ARL5AP3-201ENST00000439327 386 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 AC093156.1-201ENST00000440382 670 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 Z95327.1-201ENST00000446082 482 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC2.11□□□□□ -2.07
FOXA3P55318 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.11□□□□□ -2.07
FOXA3P55318 AP002345.1-201ENST00000456493 928 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 AC103987.1-201ENST00000473394 348 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 AC117440.1-201ENST00000474107 571 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC2.11□□□□□ -2.07
FOXA3P55318 AC073522.1-201ENST00000483312 377 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.11□□□□□ -2.07
FOXA3P55318 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.11□□□□□ -2.07
FOXA3P55318 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC2.11□□□□□ -2.07
FOXA3P55318 MTND5P4-201ENST00000514978 288 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 SNORA31.20-201ENST00000517111 133 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 HMGB1P41-201ENST00000520234 440 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.11□□□□□ -2.07
FOXA3P55318 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
FOXA3P55318 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC2.11□□□□□ -2.07
FOXA3P55318 AC084824.1-201ENST00000550917 1005 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 AL049870.4-201ENST00000555741 486 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC2.11□□□□□ -2.07
FOXA3P55318 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC2.11□□□□□ -2.07
FOXA3P55318 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.11□□□□□ -2.07
FOXA3P55318 RPL12P50-201ENST00000603116 116 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 AC015871.2-201ENST00000603605 948 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 AP005212.4-201ENST00000614206 710 ntBASIC2.11□□□□□ -2.07
FOXA3P55318 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.11□□□□□ -2.07
FOXA3P55318 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC2.11□□□□□ -2.07
FOXA3P55318 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
FOXA3P55318 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
FOXA3P55318 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXA3P55318 AC092593.1-201ENST00000515413 1815 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
FOXA3P55318 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
FOXA3P55318 MIR6073-201ENST00000352083 89 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 RNU1-33P-201ENST00000364249 162 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 RNA5SP139-201ENST00000364340 117 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 DEFA7P-201ENST00000382676 285 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 RNU6-837P-201ENST00000391056 108 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 RN7SKP202-201ENST00000410439 330 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC2.1□□□□□ -2.07
FOXA3P55318 AC245052.5-201ENST00000416320 649 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC2.1□□□□□ -2.07
FOXA3P55318 RPF2P1-201ENST00000424137 906 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 AC007389.2-201ENST00000434630 306 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXA3P55318 snoU13.3-201ENST00000459441 104 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 AC003982.1-202ENST00000469928 248 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC2.1□□□□□ -2.07
FOXA3P55318 RN7SL293P-201ENST00000481765 281 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 OR2A20P-203ENST00000498397 1268 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 DSTNP2-201ENST00000504533 515 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 AC117525.1-201ENST00000515228 503 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 AC090136.1-201ENST00000520009 240 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXA3P55318 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXA3P55318 AC128657.1-201ENST00000549459 145 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 AC011611.1-201ENST00000552179 197 ntBASIC2.1□□□□□ -2.07
FOXA3P55318 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXA3P55318 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC2.1□□□□□ -2.07
FOXA3P55318 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms