Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.52□□□□□ -1.85
SOX3P41225 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SOX3P41225 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.52□□□□□ -1.85
SOX3P41225 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.52□□□□□ -1.85
SOX3P41225 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
SOX3P41225 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SOX3P41225 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SOX3P41225 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
SOX3P41225 ZNF542P-204ENST00000482727 1305 ntBASIC3.51□□□□□ -1.85
SOX3P41225 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.51□□□□□ -1.85
SOX3P41225 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
SOX3P41225 RNA5SP124-201ENST00000362739 110 ntBASIC3.51□□□□□ -1.85
SOX3P41225 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
SOX3P41225 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
SOX3P41225 U8.11-201ENST00000384699 133 ntBASIC3.51□□□□□ -1.85
SOX3P41225 U8.12-201ENST00000384701 133 ntBASIC3.51□□□□□ -1.85
SOX3P41225 SNORA48.7-201ENST00000391302 135 ntBASIC3.51□□□□□ -1.85
SOX3P41225 HLFP1-201ENST00000402375 499 ntBASIC3.51□□□□□ -1.85
SOX3P41225 AL023807.1-201ENST00000407932 359 ntBASIC3.51□□□□□ -1.85
SOX3P41225 RPL30P2-201ENST00000414021 291 ntBASIC3.51□□□□□ -1.85
SOX3P41225 AC018644.1-201ENST00000429934 551 ntBASIC3.51□□□□□ -1.85
SOX3P41225 MTND5P25-201ENST00000430499 799 ntBASIC3.51□□□□□ -1.85
SOX3P41225 FTH1P6-201ENST00000430768 320 ntBASIC3.51□□□□□ -1.85
SOX3P41225 YWHAZP7-201ENST00000436906 631 ntBASIC3.51□□□□□ -1.85
SOX3P41225 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC3.51□□□□□ -1.85
SOX3P41225 AC104978.1-201ENST00000449387 391 ntBASIC3.51□□□□□ -1.85
SOX3P41225 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
SOX3P41225 NANOGP10-201ENST00000453325 895 ntBASIC3.51□□□□□ -1.85
SOX3P41225 RPL18AP17-201ENST00000455326 198 ntBASIC3.51□□□□□ -1.85
SOX3P41225 TRBV26-201ENST00000456572 344 ntBASIC3.51□□□□□ -1.85
SOX3P41225 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.51□□□□□ -1.85
SOX3P41225 U8.18-201ENST00000459285 133 ntBASIC3.51□□□□□ -1.85
SOX3P41225 TRBV12-2-201ENST00000489763 344 ntBASIC3.51□□□□□ -1.85
SOX3P41225 AC106872.2-201ENST00000494303 480 ntBASIC3.51□□□□□ -1.85
SOX3P41225 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC3.51□□□□□ -1.85
SOX3P41225 AC119751.5-201ENST00000514077 770 ntBASIC3.51□□□□□ -1.85
SOX3P41225 RN7SKP83-201ENST00000516512 178 ntBASIC3.51□□□□□ -1.85
SOX3P41225 RNA5SP164-201ENST00000516533 110 ntBASIC3.51□□□□□ -1.85
SOX3P41225 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.51□□□□□ -1.85
SOX3P41225 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC3.51□□□□□ -1.85
SOX3P41225 OR5AK1P-201ENST00000524837 922 ntBASIC3.51□□□□□ -1.85
SOX3P41225 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.51□□□□□ -1.85
SOX3P41225 RFPL1S-203ENST00000539579 330 ntBASIC3.51□□□□□ -1.85
SOX3P41225 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.51□□□□□ -1.85
SOX3P41225 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.51□□□□□ -1.85
SOX3P41225 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.51□□□□□ -1.85
SOX3P41225 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.51□□□□□ -1.85
SOX3P41225 AL121576.1-201ENST00000556055 276 ntBASIC3.51□□□□□ -1.85
SOX3P41225 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.51□□□□□ -1.85
SOX3P41225 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.51□□□□□ -1.85
SOX3P41225 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.51□□□□□ -1.85
SOX3P41225 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.51□□□□□ -1.85
SOX3P41225 AL353778.1-201ENST00000603149 408 ntBASIC3.51□□□□□ -1.85
SOX3P41225 AC103881.1-201ENST00000603476 538 ntBASIC3.51□□□□□ -1.85
SOX3P41225 AC010680.3-201ENST00000604215 520 ntBASIC3.51□□□□□ -1.85
SOX3P41225 AC245389.1-201ENST00000605141 529 ntBASIC3.51□□□□□ -1.85
SOX3P41225 OR6R2P-201ENST00000609216 300 ntBASIC3.51□□□□□ -1.85
SOX3P41225 AL139418.1-201ENST00000613613 177 ntBASIC3.51□□□□□ -1.85
SOX3P41225 uc_338.32-201ENST00000615087 172 ntBASIC3.51□□□□□ -1.85
SOX3P41225 AC006133.1-201ENST00000617106 264 ntBASIC3.51□□□□□ -1.85
SOX3P41225 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.51□□□□□ -1.85
SOX3P41225 AC039056.2-201ENST00000622261 511 ntBASIC3.51□□□□□ -1.85
SOX3P41225 CR392039.5-201ENST00000623201 510 ntBASIC3.51□□□□□ -1.85
SOX3P41225 AC092184.1-201ENST00000625042 715 ntBASIC3.51□□□□□ -1.85
SOX3P41225 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC3.51□□□□□ -1.85
SOX3P41225 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.51□□□□□ -1.85
SOX3P41225 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
SOX3P41225 AL390862.1-201ENST00000635467 1469 ntBASIC3.51□□□□□ -1.85
SOX3P41225 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
SOX3P41225 ZNF33CP-201ENST00000432492 2030 ntBASIC3.51□□□□□ -1.85
SOX3P41225 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
SOX3P41225 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.85
SOX3P41225 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
SOX3P41225 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
SOX3P41225 AC130650.2-201ENST00000618736 2403 ntBASIC3.5□□□□□ -1.85
SOX3P41225 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
SOX3P41225 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
SOX3P41225 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
SOX3P41225 SNORA51.6-201ENST00000384151 125 ntBASIC3.5□□□□□ -1.85
SOX3P41225 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
SOX3P41225 RAP1BP1-201ENST00000412709 553 ntBASIC3.5□□□□□ -1.85
SOX3P41225 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.5□□□□□ -1.85
SOX3P41225 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.5□□□□□ -1.85
SOX3P41225 AL139247.1-201ENST00000422768 325 ntBASIC3.5□□□□□ -1.85
SOX3P41225 AL133547.1-201ENST00000448546 220 ntBASIC3.5□□□□□ -1.85
SOX3P41225 AC104073.1-201ENST00000451988 151 ntBASIC3.5□□□□□ -1.85
SOX3P41225 AL109741.2-201ENST00000455561 343 ntBASIC3.5□□□□□ -1.85
SOX3P41225 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.5□□□□□ -1.85
SOX3P41225 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
SOX3P41225 ACTR3P3-201ENST00000480448 893 ntBASIC3.5□□□□□ -1.85
SOX3P41225 AP000563.1-201ENST00000490865 758 ntBASIC3.5□□□□□ -1.85
SOX3P41225 OR4G11P-201ENST00000492842 939 ntBASIC3.5□□□□□ -1.85
SOX3P41225 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC3.5□□□□□ -1.85
SOX3P41225 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.5□□□□□ -1.85
SOX3P41225 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.5□□□□□ -1.85
SOX3P41225 RNU6-1129P-201ENST00000515964 104 ntBASIC3.5□□□□□ -1.85
SOX3P41225 RN7SKP234-201ENST00000517173 224 ntBASIC3.5□□□□□ -1.85
SOX3P41225 AP001636.2-201ENST00000525517 696 ntBASIC3.5□□□□□ -1.85
SOX3P41225 OR4A45P-201ENST00000529954 901 ntBASIC3.5□□□□□ -1.85
SOX3P41225 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms