Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC113347.3-201ENST00000509113 148 ntBASIC3.25□□□□□ -1.89
SDC1P18827 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.25□□□□□ -1.89
SDC1P18827 AC104619.4-201ENST00000510773 249 ntBASIC3.25□□□□□ -1.89
SDC1P18827 FABP5P12-201ENST00000515543 389 ntBASIC3.25□□□□□ -1.89
SDC1P18827 RN7SKP13-201ENST00000515933 244 ntBASIC3.25□□□□□ -1.89
SDC1P18827 AC087808.1-201ENST00000520501 361 ntBASIC3.25□□□□□ -1.89
SDC1P18827 AC027309.2-201ENST00000520566 192 ntBASIC3.25□□□□□ -1.89
SDC1P18827 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.25□□□□□ -1.89
SDC1P18827 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.25□□□□□ -1.89
SDC1P18827 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.25□□□□□ -1.89
SDC1P18827 AC090502.2-201ENST00000549267 280 ntBASIC3.25□□□□□ -1.89
SDC1P18827 AC138915.2-201ENST00000569776 97 ntBASIC3.25□□□□□ -1.89
SDC1P18827 AC008507.1-201ENST00000587506 734 ntBASIC3.25□□□□□ -1.89
SDC1P18827 BNIP3P40-201ENST00000596017 556 ntBASIC3.25□□□□□ -1.89
SDC1P18827 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.25□□□□□ -1.89
SDC1P18827 AL513477.2-201ENST00000607858 568 ntBASIC3.25□□□□□ -1.89
SDC1P18827 AC024257.5-201ENST00000612739 531 ntBASIC3.25□□□□□ -1.89
SDC1P18827 AC023158.2-201ENST00000614876 543 ntBASIC3.25□□□□□ -1.89
SDC1P18827 AC090772.4-201ENST00000623599 362 ntBASIC3.25□□□□□ -1.89
SDC1P18827 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.25□□□□□ -1.89
SDC1P18827 AC138649.5-201ENST00000637456 137 ntBASIC3.25□□□□□ -1.89
SDC1P18827 MKKS-204ENST00000639674 192 ntBASIC3.25□□□□□ -1.89
SDC1P18827 LINC02211-204ENST00000642024 1070 ntBASIC3.25□□□□□ -1.89
SDC1P18827 ZNF285B-201ENST00000561698 1767 ntBASIC3.25□□□□□ -1.89
SDC1P18827 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SDC1P18827 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
SDC1P18827 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
SDC1P18827 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SDC1P18827 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SDC1P18827 AC017071.1-201ENST00000564407 2204 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AC007496.3-201ENST00000624987 3443 ntBASIC3.24□□□□□ -1.89
SDC1P18827 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SDC1P18827 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
SDC1P18827 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.24□□□□□ -1.89
SDC1P18827 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
SDC1P18827 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SDC1P18827 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SDC1P18827 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
SDC1P18827 RNU6-263P-201ENST00000363811 107 ntBASIC3.24□□□□□ -1.89
SDC1P18827 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
SDC1P18827 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
SDC1P18827 RNU6-339P-201ENST00000384310 107 ntBASIC3.24□□□□□ -1.89
SDC1P18827 Y_RNA.493-201ENST00000384422 102 ntBASIC3.24□□□□□ -1.89
SDC1P18827 MIR1250-201ENST00000408098 113 ntBASIC3.24□□□□□ -1.89
SDC1P18827 RN7SKP159-201ENST00000410657 292 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AL133384.1-201ENST00000412744 351 ntBASIC3.24□□□□□ -1.89
SDC1P18827 RPS7P13-201ENST00000413955 498 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AL161449.1-201ENST00000414531 1199 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AC093578.1-201ENST00000415219 368 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AC106883.1-201ENST00000418805 562 ntBASIC3.24□□□□□ -1.89
SDC1P18827 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
SDC1P18827 RPL31P12-201ENST00000422587 358 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC3.24□□□□□ -1.89
SDC1P18827 AL049610.1-201ENST00000423374 372 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AL035246.1-201ENST00000433554 1255 ntBASIC3.24□□□□□ -1.89
SDC1P18827 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.24□□□□□ -1.89
SDC1P18827 MTCO1P48-201ENST00000448024 1096 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.24□□□□□ -1.89
SDC1P18827 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.24□□□□□ -1.89
SDC1P18827 PABPC1P3-201ENST00000469174 459 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AC010301.1-201ENST00000473936 355 ntBASIC3.24□□□□□ -1.89
SDC1P18827 RPS4XP22-201ENST00000480755 780 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AC013828.1-201ENST00000481845 158 ntBASIC3.24□□□□□ -1.89
SDC1P18827 RPL23AP44-201ENST00000482216 473 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.24□□□□□ -1.89
SDC1P18827 RPL5P23-201ENST00000496040 868 ntBASIC3.24□□□□□ -1.89
SDC1P18827 MTCYBP16-201ENST00000509187 1129 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.24□□□□□ -1.89
SDC1P18827 RNU1-95P-201ENST00000516357 160 ntBASIC3.24□□□□□ -1.89
SDC1P18827 RNU1-128P-201ENST00000516704 160 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.24□□□□□ -1.89
SDC1P18827 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.24□□□□□ -1.89
SDC1P18827 AP001189.2-201ENST00000527320 189 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AC103843.2-201ENST00000530523 682 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AC006518.1-201ENST00000541449 943 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.24□□□□□ -1.89
SDC1P18827 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.24□□□□□ -1.89
SDC1P18827 GTF2IP8-201ENST00000560687 584 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.24□□□□□ -1.89
SDC1P18827 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC3.24□□□□□ -1.89
SDC1P18827 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC3.24□□□□□ -1.89
SDC1P18827 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC3.24□□□□□ -1.89
SDC1P18827 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC3.24□□□□□ -1.89
SDC1P18827 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.24□□□□□ -1.89
SDC1P18827 RNU4-5P-201ENST00000607255 135 ntBASIC3.24□□□□□ -1.89
SDC1P18827 MIR7851-201ENST00000610611 160 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AC008083.4-201ENST00000615076 444 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AC022960.3-201ENST00000619794 441 ntBASIC3.24□□□□□ -1.89
SDC1P18827 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.24□□□□□ -1.89
SDC1P18827 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.24□□□□□ -1.89
SDC1P18827 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SDC1P18827 AL365440.1-201ENST00000436135 2167 ntBASIC3.24□□□□□ -1.89
SDC1P18827 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.24□□□□□ -1.89
SDC1P18827 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
SDC1P18827 AC109315.1-201ENST00000584143 1347 ntBASIC3.23□□□□□ -1.89
SDC1P18827 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
SDC1P18827 AL353746.1-201ENST00000566293 6881 ntBASIC3.23□□□□□ -1.89
SDC1P18827 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
SDC1P18827 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
SDC1P18827 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms