Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.13□□□□□ -2.23
USH2AO75445 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC1.13□□□□□ -2.23
USH2AO75445 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC1.13□□□□□ -2.23
USH2AO75445 SNORD62.1-201ENST00000362541 86 ntBASIC1.13□□□□□ -2.23
USH2AO75445 U3.23-201ENST00000391132 200 ntBASIC1.13□□□□□ -2.23
USH2AO75445 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC1.13□□□□□ -2.23
USH2AO75445 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC1.13□□□□□ -2.23
USH2AO75445 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.13□□□□□ -2.23
USH2AO75445 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
USH2AO75445 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC1.13□□□□□ -2.23
USH2AO75445 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
USH2AO75445 RNU6-457P-201ENST00000363999 107 ntBASIC1.12□□□□□ -2.23
USH2AO75445 RNU6-356P-201ENST00000384140 107 ntBASIC1.12□□□□□ -2.23
USH2AO75445 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.12□□□□□ -2.23
USH2AO75445 RPL23AP4-201ENST00000427757 463 ntBASIC1.12□□□□□ -2.23
USH2AO75445 RPS29P11-201ENST00000496507 171 ntBASIC1.12□□□□□ -2.23
USH2AO75445 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC1.12□□□□□ -2.23
USH2AO75445 AC087565.3-202ENST00000642085 1603 ntBASIC1.12□□□□□ -2.23
USH2AO75445 AC069528.2-201ENST00000624849 1991 ntBASIC1.12□□□□□ -2.23
USH2AO75445 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
USH2AO75445 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
USH2AO75445 MTND2P11-201ENST00000423638 648 ntBASIC1.12□□□□□ -2.23
USH2AO75445 Z73417.1-201ENST00000447373 778 ntBASIC1.12□□□□□ -2.23
USH2AO75445 USP9YP2-201ENST00000504503 1000 ntBASIC1.12□□□□□ -2.23
USH2AO75445 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC1.12□□□□□ -2.23
USH2AO75445 USP9YP1-201ENST00000513521 1002 ntBASIC1.12□□□□□ -2.23
USH2AO75445 NPM1P35-201ENST00000533043 868 ntBASIC1.12□□□□□ -2.23
USH2AO75445 AC022709.1-201ENST00000615967 87 ntBASIC1.12□□□□□ -2.23
USH2AO75445 AC074276.2-201ENST00000619891 348 ntBASIC1.12□□□□□ -2.23
USH2AO75445 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
USH2AO75445 AC107081.3-201ENST00000612715 2034 ntBASIC1.12□□□□□ -2.23
USH2AO75445 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
USH2AO75445 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC1.12□□□□□ -2.23
USH2AO75445 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
USH2AO75445 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
USH2AO75445 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
USH2AO75445 SNORA67.3-201ENST00000384366 140 ntBASIC1.12□□□□□ -2.23
USH2AO75445 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
USH2AO75445 HMGB3P6-201ENST00000444896 598 ntBASIC1.12□□□□□ -2.23
USH2AO75445 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC1.12□□□□□ -2.23
USH2AO75445 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC1.12□□□□□ -2.23
USH2AO75445 MTND5P29-201ENST00000458676 1807 ntBASIC1.12□□□□□ -2.23
USH2AO75445 SRIP1-201ENST00000489235 288 ntBASIC1.12□□□□□ -2.23
USH2AO75445 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC1.12□□□□□ -2.23
USH2AO75445 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC1.12□□□□□ -2.23
USH2AO75445 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.12□□□□□ -2.23
USH2AO75445 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC1.12□□□□□ -2.23
USH2AO75445 AL355578.1-201ENST00000607405 1328 ntBASIC1.12□□□□□ -2.23
USH2AO75445 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC1.12□□□□□ -2.23
USH2AO75445 AL162233.1-201ENST00000620014 944 ntBASIC1.12□□□□□ -2.23
USH2AO75445 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.12□□□□□ -2.23
USH2AO75445 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
USH2AO75445 RNU2-68P-201ENST00000410878 191 ntBASIC1.12□□□□□ -2.23
USH2AO75445 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC1.12□□□□□ -2.23
USH2AO75445 AC068313.1-201ENST00000604028 1008 ntBASIC1.12□□□□□ -2.23
USH2AO75445 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC1.12□□□□□ -2.23
USH2AO75445 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
USH2AO75445 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
USH2AO75445 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
USH2AO75445 Z99496.1-201ENST00000469424 1477 ntBASIC1.12□□□□□ -2.23
USH2AO75445 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC1.12□□□□□ -2.23
USH2AO75445 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC1.12□□□□□ -2.23
USH2AO75445 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
USH2AO75445 BTF3P4-201ENST00000418852 495 ntBASIC1.12□□□□□ -2.23
USH2AO75445 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC1.12□□□□□ -2.23
USH2AO75445 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC1.12□□□□□ -2.23
USH2AO75445 AC106872.3-201ENST00000495104 446 ntBASIC1.12□□□□□ -2.23
USH2AO75445 ENSA-210ENST00000503241 574 ntTSL 3 BASIC1.12□□□□□ -2.23
USH2AO75445 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC1.12□□□□□ -2.23
USH2AO75445 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.12□□□□□ -2.23
USH2AO75445 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC1.12□□□□□ -2.23
USH2AO75445 C1GALT1P1-201ENST00000548895 1089 ntBASIC1.12□□□□□ -2.23
USH2AO75445 AC007621.1-201ENST00000604544 437 ntBASIC1.12□□□□□ -2.23
USH2AO75445 AC103710.2-201ENST00000609912 942 ntBASIC1.12□□□□□ -2.23
USH2AO75445 AC016542.2-201ENST00000624201 619 ntBASIC1.12□□□□□ -2.23
USH2AO75445 AC244205.2-202ENST00000635781 342 ntBASIC1.12□□□□□ -2.23
USH2AO75445 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
USH2AO75445 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
USH2AO75445 RPLP0P7-201ENST00000416050 667 ntBASIC1.11□□□□□ -2.23
USH2AO75445 AP1B1P2-201ENST00000416196 106 ntBASIC1.11□□□□□ -2.23
USH2AO75445 ATG3P1-201ENST00000419507 911 ntBASIC1.11□□□□□ -2.23
USH2AO75445 AC003982.1-202ENST00000469928 248 ntBASIC1.11□□□□□ -2.23
USH2AO75445 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC1.11□□□□□ -2.23
USH2AO75445 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC1.11□□□□□ -2.23
USH2AO75445 MIR6873-201ENST00000622788 63 ntBASIC1.11□□□□□ -2.23
USH2AO75445 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC1.11□□□□□ -2.23
USH2AO75445 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC1.11□□□□□ -2.23
USH2AO75445 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
USH2AO75445 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC1.11□□□□□ -2.23
USH2AO75445 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC1.11□□□□□ -2.23
USH2AO75445 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
USH2AO75445 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC1.11□□□□□ -2.23
USH2AO75445 HMGB3P11-201ENST00000440127 604 ntBASIC1.11□□□□□ -2.23
USH2AO75445 MTND4LP16-201ENST00000440828 295 ntBASIC1.11□□□□□ -2.23
USH2AO75445 RPS4XP11-201ENST00000446897 772 ntBASIC1.11□□□□□ -2.23
USH2AO75445 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC1.11□□□□□ -2.23
USH2AO75445 AC008277.2-201ENST00000605196 797 ntBASIC1.11□□□□□ -2.23
USH2AO75445 MTND5P3-201ENST00000438536 1800 ntBASIC1.11□□□□□ -2.23
USH2AO75445 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC1.11□□□□□ -2.23
USH2AO75445 MTND5P12-201ENST00000502851 1449 ntBASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms