Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 OR6C73P-201ENST00000546432 358 ntBASIC3.75□□□□□ -1.81
VPS54Q9P1Q0 HIGD1AP1-201ENST00000550979 275 ntBASIC3.75□□□□□ -1.81
VPS54Q9P1Q0 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.75□□□□□ -1.81
VPS54Q9P1Q0 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.75□□□□□ -1.81
VPS54Q9P1Q0 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS54Q9P1Q0 AC090330.1-201ENST00000588646 764 ntBASIC3.75□□□□□ -1.81
VPS54Q9P1Q0 VN1R87P-201ENST00000596706 487 ntBASIC3.75□□□□□ -1.81
VPS54Q9P1Q0 CKS1BP3-201ENST00000600888 237 ntBASIC3.75□□□□□ -1.81
VPS54Q9P1Q0 AC024220.1-201ENST00000603675 484 ntBASIC3.75□□□□□ -1.81
VPS54Q9P1Q0 AP002802.2-201ENST00000605877 235 ntBASIC3.75□□□□□ -1.81
VPS54Q9P1Q0 AL136370.1-201ENST00000608166 691 ntBASIC3.75□□□□□ -1.81
VPS54Q9P1Q0 MIR8058-201ENST00000615737 89 ntBASIC3.75□□□□□ -1.81
VPS54Q9P1Q0 AC084757.4-201ENST00000616350 526 ntBASIC3.75□□□□□ -1.81
VPS54Q9P1Q0 VN1R7P-201ENST00000619242 903 ntBASIC3.75□□□□□ -1.81
VPS54Q9P1Q0 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC3.75□□□□□ -1.81
VPS54Q9P1Q0 MIR4278-201ENST00000636094 69 ntBASIC3.75□□□□□ -1.81
VPS54Q9P1Q0 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS54Q9P1Q0 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 RNA5SP267-201ENST00000364893 126 ntBASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 RNU6-1000P-201ENST00000391066 106 ntBASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 AC069218.2-201ENST00000411665 344 ntBASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 AC008427.1-201ENST00000503102 655 ntBASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 AC118282.2-201ENST00000508739 374 ntBASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 TMEM248P1-201ENST00000510579 951 ntBASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 SCARNA20.6-201ENST00000517251 106 ntBASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 AC022069.1-201ENST00000582910 658 ntBASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 AC007566.2-201ENST00000603642 413 ntBASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 AL009028.1-201ENST00000604895 802 ntBASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 AC073657.2-201ENST00000605661 303 ntBASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 AC004777.1-201ENST00000624317 287 ntBASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS54Q9P1Q0 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 RNU6-619P-201ENST00000365146 108 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 RNU6-441P-201ENST00000384545 106 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 RNU6-1257P-201ENST00000384625 110 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 RPL7P27-201ENST00000403775 720 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 RPS7P13-201ENST00000413955 498 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 LIPT1P1-201ENST00000415870 1186 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 AC009237.2-201ENST00000421358 284 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 PTP4A1P7-201ENST00000423476 514 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 AC005517.2-201ENST00000424673 553 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 AC092634.2-201ENST00000428146 1010 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 RNF2P1-201ENST00000442955 1010 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 HMGN2P21-201ENST00000447764 270 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 AC244505.3-201ENST00000454598 187 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 BTF3P5-201ENST00000457252 467 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 AC087312.1-201ENST00000471411 480 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 AC026414.1-201ENST00000504046 698 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 MIR2682-201ENST00000580305 110 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 AC018645.2-201ENST00000609151 472 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 AL157817.1-201ENST00000614264 790 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 U6.98-201ENST00000637157 84 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 AC000367.1-201ENST00000452711 1766 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
VPS54Q9P1Q0 MTCO1P24-201ENST00000515438 1558 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 AF117829.1-206ENST00000621883 3802 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 RNU1-75P-201ENST00000347264 129 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 UBE2Q2P1-202ENST00000354771 883 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 MTCO2P31-201ENST00000402702 684 ntBASIC3.72□□□□□ -1.81
VPS54Q9P1Q0 BTF3P8-201ENST00000414577 526 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms