Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 FABP7P1-201ENST00000424004 391 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AC005517.2-201ENST00000424673 553 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 RPL34P6-201ENST00000432390 345 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 TIMM9P1-201ENST00000436122 256 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 RHOT1P3-201ENST00000436571 331 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 PSMD10P3-201ENST00000437000 448 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 RAC1P7-201ENST00000445367 377 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 UBDP1-202ENST00000457888 382 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AP000942.1-201ENST00000463969 747 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AC011979.2-201ENST00000527568 352 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AP003072.2-201ENST00000527756 676 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AP000676.2-201ENST00000529711 301 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 BRD9P1-201ENST00000529855 560 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 GSTP1P1-201ENST00000548078 319 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AL121579.1-201ENST00000555129 305 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AC009117.1-201ENST00000563948 554 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AL669831.4-202ENST00000590817 238 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 BNIP3P33-201ENST00000598912 569 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 NRBF2P5-201ENST00000603087 788 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AC008536.2-201ENST00000607284 349 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AL391813.2-201ENST00000609113 322 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AC009161.2-201ENST00000624626 138 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AC138915.3-201ENST00000562908 1389 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 AC131971.1-201ENST00000332881 1482 ntBASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.98□□□□□ -1.61
TRIM39Q9HCM9 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 CR848007.1-201ENST00000442354 1699 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 LINC00622-201ENST00000562811 1570 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 Y_RNA.89-201ENST00000363031 102 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 RNA5SP123-201ENST00000363244 119 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 RNU6-1090P-201ENST00000364065 94 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 RNU6-1078P-201ENST00000364522 103 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 RNU6-108P-201ENST00000365558 107 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AC019155.1-201ENST00000382242 574 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 SNORA77-201ENST00000408716 125 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 GPR143P-201ENST00000434155 205 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AL590399.6-201ENST00000446396 307 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AC079781.2-201ENST00000446424 169 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 SLC25A18P1-201ENST00000449385 454 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AC245028.2-201ENST00000458673 253 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AK3P4-201ENST00000504283 583 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 NDUFB5P1-201ENST00000508134 564 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 RNU6-1281P-201ENST00000516223 105 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 Y_RNA.704-201ENST00000516851 102 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 RNA5SP337-201ENST00000517007 109 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 HMGN1P28-201ENST00000521340 364 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AC022616.3-201ENST00000523940 148 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 OR4R3P-201ENST00000525084 838 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 MTND1P35-201ENST00000526739 508 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AL359212.1-201ENST00000556608 614 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AP005205.1-201ENST00000563503 508 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 HNRNPCP4-201ENST00000571636 900 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AC012417.1-201ENST00000582307 1039 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AC011487.3-201ENST00000593607 453 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 RPL26P30-202ENST00000602923 645 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AP001330.5-201ENST00000607176 411 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AC007038.2-201ENST00000608095 740 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AC025253.1-201ENST00000613623 543 ntBASIC4.97□□□□□ -1.61
TRIM39Q9HCM9 AL161637.1-201ENST00000622380 412 ntBASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms