Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL356276.2-201ENST00000435919 558 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AL591503.2-201ENST00000442314 1005 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AC007967.1-201ENST00000455422 1159 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AC008481.1-201ENST00000463278 396 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AC093767.1-201ENST00000504523 156 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AC139783.2-201ENST00000504847 1145 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AC006499.5-201ENST00000505037 514 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 HSPE1P23-201ENST00000509838 286 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 RPL23AP94-201ENST00000512518 302 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 RNU1-103P-201ENST00000516502 125 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 IGLVIV-53-201ENST00000520107 367 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AL133457.1-201ENST00000564251 987 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AC008088.1-201ENST00000580993 280 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 MIR4513-201ENST00000581077 86 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AC025946.2-201ENST00000603398 234 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 LLPHP1-201ENST00000603571 367 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AL009028.1-201ENST00000604895 802 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 RNA5SP108-201ENST00000605921 117 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AC004223.4-201ENST00000612426 332 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AL607023.1-201ENST00000620045 248 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AC231657.1-201ENST00000624313 397 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AC074029.4-201ENST00000624796 1859 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 MTCO1P14-201ENST00000441695 1559 ntBASIC4.06□□□□□ -1.76
COL28A1Q2UY09 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
COL28A1Q2UY09 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AL079305.1-201ENST00000623159 3008 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AC016588.2-201ENST00000632484 3021 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AC097504.1-201ENST00000515103 2415 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 RNA5SP72-201ENST00000364442 117 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 RNU6-356P-201ENST00000384140 107 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 CYCSP45-201ENST00000402289 315 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 RPS20P14-201ENST00000412545 360 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 SETP8-201ENST00000435341 628 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 PDSS1P2-201ENST00000449397 678 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 PPIAP3-201ENST00000450588 505 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 ZNF736P5Y-201ENST00000451173 805 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 VN1R32P-201ENST00000452234 905 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AC104685.1-201ENST00000502445 371 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 RPF2P2-201ENST00000504693 896 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AC074250.1-201ENST00000511117 192 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 KCTD9P2-201ENST00000512203 1013 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 RNA5SP519-201ENST00000516480 119 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 RNU6-678P-201ENST00000516832 109 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 RNU6-232P-201ENST00000517144 64 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AC026403.1-201ENST00000518938 295 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AC239860.2-201ENST00000525886 270 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 OR7K1P-201ENST00000546439 926 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AC090888.1-201ENST00000561335 1141 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AC072039.2-201ENST00000608883 439 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AL354976.1-201ENST00000613843 387 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AC025588.4-201ENST00000615802 908 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AC015967.1-201ENST00000619893 476 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 MIR6500-201ENST00000622700 86 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 AP000676.3-201ENST00000623299 569 ntBASIC4.05□□□□□ -1.76
COL28A1Q2UY09 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL28A1Q2UY09 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms