Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CIITAP33076 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CIITAP33076 AC107081.3-201ENST00000612715 2034 ntBASIC4.43□□□□□ -1.7
CIITAP33076 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
CIITAP33076 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CIITAP33076 RNU4-75P-201ENST00000364621 146 ntBASIC4.43□□□□□ -1.7
CIITAP33076 RHOT1P2-201ENST00000366423 333 ntBASIC4.43□□□□□ -1.7
CIITAP33076 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
CIITAP33076 U1.1-201ENST00000384101 164 ntBASIC4.43□□□□□ -1.7
CIITAP33076 MIR93-201ENST00000385024 80 ntBASIC4.43□□□□□ -1.7
CIITAP33076 SNORA26.8-201ENST00000391306 124 ntBASIC4.43□□□□□ -1.7
CIITAP33076 ATP5F1P4-201ENST00000397288 746 ntBASIC4.43□□□□□ -1.7
CIITAP33076 ZNF736P2Y-201ENST00000416040 1279 ntBASIC4.43□□□□□ -1.7
CIITAP33076 RPL31P54-201ENST00000429803 370 ntBASIC4.43□□□□□ -1.7
CIITAP33076 AL353706.1-201ENST00000436728 494 ntBASIC4.43□□□□□ -1.7
CIITAP33076 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC4.43□□□□□ -1.7
CIITAP33076 AP000936.2-201ENST00000447151 681 ntBASIC4.43□□□□□ -1.7
CIITAP33076 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC4.43□□□□□ -1.7
CIITAP33076 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC4.43□□□□□ -1.7
CIITAP33076 AC010307.1-201ENST00000467206 836 ntBASIC4.43□□□□□ -1.7
CIITAP33076 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.43□□□□□ -1.7
CIITAP33076 PRELID3BP7-201ENST00000503606 469 ntBASIC4.43□□□□□ -1.7
CIITAP33076 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CIITAP33076 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC4.43□□□□□ -1.7
CIITAP33076 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.43□□□□□ -1.7
CIITAP33076 MTCO3P7-201ENST00000510008 774 ntBASIC4.43□□□□□ -1.7
CIITAP33076 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC4.43□□□□□ -1.7
CIITAP33076 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.43□□□□□ -1.7
CIITAP33076 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.43□□□□□ -1.7
CIITAP33076 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CIITAP33076 HIGD1AP10-201ENST00000527837 282 ntBASIC4.43□□□□□ -1.7
CIITAP33076 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.43□□□□□ -1.7
CIITAP33076 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC4.43□□□□□ -1.7
CIITAP33076 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC4.43□□□□□ -1.7
CIITAP33076 AC106785.1-201ENST00000565935 262 ntBASIC4.43□□□□□ -1.7
CIITAP33076 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC4.43□□□□□ -1.7
CIITAP33076 ROCK1P1-201ENST00000573767 549 ntBASIC4.43□□□□□ -1.7
CIITAP33076 AC010680.3-201ENST00000604215 520 ntBASIC4.43□□□□□ -1.7
CIITAP33076 AL139286.1-201ENST00000604465 483 ntBASIC4.43□□□□□ -1.7
CIITAP33076 AP003117.2-201ENST00000606010 545 ntBASIC4.43□□□□□ -1.7
CIITAP33076 AC005332.6-201ENST00000613178 446 ntBASIC4.43□□□□□ -1.7
CIITAP33076 AL158063.1-201ENST00000615349 536 ntBASIC4.43□□□□□ -1.7
CIITAP33076 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC4.43□□□□□ -1.7
CIITAP33076 FP236240.3-201ENST00000623061 327 ntBASIC4.43□□□□□ -1.7
CIITAP33076 AC098679.5-201ENST00000624394 571 ntBASIC4.43□□□□□ -1.7
CIITAP33076 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CIITAP33076 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
CIITAP33076 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.43□□□□□ -1.7
CIITAP33076 AC018529.3-201ENST00000624212 2254 ntBASIC4.43□□□□□ -1.7
CIITAP33076 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CIITAP33076 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.43□□□□□ -1.7
CIITAP33076 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.43□□□□□ -1.7
CIITAP33076 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.43□□□□□ -1.7
CIITAP33076 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.42□□□□□ -1.7
CIITAP33076 FAM91A3P-201ENST00000456826 2544 ntBASIC4.42□□□□□ -1.7
CIITAP33076 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
CIITAP33076 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
CIITAP33076 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
CIITAP33076 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
CIITAP33076 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CIITAP33076 SNORA4.1-201ENST00000364263 144 ntBASIC4.42□□□□□ -1.7
CIITAP33076 MT-TH-201ENST00000387441 69 ntBASIC4.42□□□□□ -1.7
CIITAP33076 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CIITAP33076 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.42□□□□□ -1.7
CIITAP33076 AL031779.1-201ENST00000415663 330 ntBASIC4.42□□□□□ -1.7
CIITAP33076 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC4.42□□□□□ -1.7
CIITAP33076 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC4.42□□□□□ -1.7
CIITAP33076 AL513175.1-201ENST00000431492 780 ntBASIC4.42□□□□□ -1.7
CIITAP33076 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC4.42□□□□□ -1.7
CIITAP33076 AL590103.1-201ENST00000434488 307 ntBASIC4.42□□□□□ -1.7
CIITAP33076 USP9YP28-201ENST00000435142 589 ntBASIC4.42□□□□□ -1.7
CIITAP33076 MTND5P28-201ENST00000438005 1594 ntBASIC4.42□□□□□ -1.7
CIITAP33076 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC4.42□□□□□ -1.7
CIITAP33076 ATP5C1P1-201ENST00000441945 895 ntBASIC4.42□□□□□ -1.7
CIITAP33076 OR6C5P-201ENST00000452388 923 ntBASIC4.42□□□□□ -1.7
CIITAP33076 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC4.42□□□□□ -1.7
CIITAP33076 HMGN3P1-201ENST00000453847 193 ntBASIC4.42□□□□□ -1.7
CIITAP33076 RPL21P11-201ENST00000461458 483 ntBASIC4.42□□□□□ -1.7
CIITAP33076 NPM1P41-201ENST00000512920 831 ntBASIC4.42□□□□□ -1.7
CIITAP33076 RNU6-678P-201ENST00000516832 109 ntBASIC4.42□□□□□ -1.7
CIITAP33076 RNU6-352P-201ENST00000516908 107 ntBASIC4.42□□□□□ -1.7
CIITAP33076 RNU6-1261P-201ENST00000517194 104 ntBASIC4.42□□□□□ -1.7
CIITAP33076 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC4.42□□□□□ -1.7
CIITAP33076 OR7K1P-201ENST00000546439 926 ntBASIC4.42□□□□□ -1.7
CIITAP33076 AL121766.1-201ENST00000547436 487 ntBASIC4.42□□□□□ -1.7
CIITAP33076 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.42□□□□□ -1.7
CIITAP33076 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC4.42□□□□□ -1.7
CIITAP33076 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC4.42□□□□□ -1.7
CIITAP33076 AP001180.3-201ENST00000582221 145 ntBASIC4.42□□□□□ -1.7
CIITAP33076 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.42□□□□□ -1.7
CIITAP33076 RSL24D1P11-201ENST00000591045 491 ntBASIC4.42□□□□□ -1.7
CIITAP33076 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.42□□□□□ -1.7
CIITAP33076 AC008687.2-201ENST00000597865 520 ntBASIC4.42□□□□□ -1.7
CIITAP33076 RN7SKP299-201ENST00000606679 301 ntBASIC4.42□□□□□ -1.7
CIITAP33076 AC128687.2-201ENST00000609657 566 ntBASIC4.42□□□□□ -1.7
CIITAP33076 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
CIITAP33076 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
CIITAP33076 AC092184.1-201ENST00000625042 715 ntBASIC4.42□□□□□ -1.7
CIITAP33076 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CIITAP33076 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms