Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC5.08□□□□□ -1.6
CHMP4AQ9BY43 RNA5SP154-201ENST00000516193 111 ntBASIC5.08□□□□□ -1.6
CHMP4AQ9BY43 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC5.08□□□□□ -1.6
CHMP4AQ9BY43 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CHMP4AQ9BY43 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC5.08□□□□□ -1.6
CHMP4AQ9BY43 AC091167.4-201ENST00000605079 184 ntBASIC5.08□□□□□ -1.6
CHMP4AQ9BY43 CRYM-AS1-204ENST00000637983 556 ntBASIC5.08□□□□□ -1.6
CHMP4AQ9BY43 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC5.08□□□□□ -1.6
CHMP4AQ9BY43 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC5.08□□□□□ -1.6
CHMP4AQ9BY43 AL356473.1-201ENST00000406203 1408 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 MIR1290-201ENST00000408735 78 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 RNU6-1077P-201ENST00000410506 102 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AC092447.6-201ENST00000414578 210 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AC245052.5-201ENST00000416320 649 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 Z97055.1-201ENST00000419730 712 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 YPEL5P1-201ENST00000419731 367 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 MRPS36P1-201ENST00000421291 307 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 PSMA6P3-201ENST00000428242 164 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 MTND2P5-201ENST00000432656 1006 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 CDC27P1-201ENST00000445384 715 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 RPS15AP17-201ENST00000470598 390 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AC025445.1-201ENST00000502728 300 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 COX7A2P2-201ENST00000505291 250 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 SNORD59.2-201ENST00000516873 68 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 NDUFA5P2-201ENST00000519723 344 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 ERHP1-201ENST00000523006 310 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AC012669.1-201ENST00000603209 283 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 BNIP3P31-201ENST00000604515 566 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AL031176.1-201ENST00000604554 466 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AC012443.1-201ENST00000605605 231 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AC024060.1-201ENST00000607052 494 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AC092574.1-201ENST00000609771 420 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AC024257.5-201ENST00000612739 531 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AL353748.2-201ENST00000622148 471 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AL354798.1-201ENST00000622505 329 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 LINC00561-201ENST00000565815 2738 ntBASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
CHMP4AQ9BY43 AC021755.1-201ENST00000559747 1447 ntBASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 RNA5SP52-201ENST00000362448 134 ntBASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 RNA5SP399-201ENST00000364003 117 ntBASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 SNORA1.3-201ENST00000384676 136 ntBASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 RNU6-1000P-201ENST00000391066 106 ntBASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 AL451050.1-201ENST00000450126 415 ntBASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 MTCO3P11-201ENST00000455103 774 ntBASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 AC108734.3-201ENST00000481241 1165 ntBASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 AC113347.3-201ENST00000509113 148 ntBASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 NPM1P41-201ENST00000512920 831 ntBASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 MTND2P7-201ENST00000521337 640 ntBASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 GNRHR2P1-201ENST00000555315 631 ntBASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 AC128687.2-201ENST00000609657 566 ntBASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 MIR6076-201ENST00000617521 113 ntBASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 AC253576.2-201ENST00000618815 580 ntBASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 AC013437.2-201ENST00000639587 677 ntBASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CHMP4AQ9BY43 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 ACEA_U3.1-201ENST00000363057 217 ntBASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 FAT1P1-201ENST00000406588 507 ntBASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 RN7SKP159-201ENST00000410657 292 ntBASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 AC012497.1-201ENST00000429392 575 ntBASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 NEK4P1-201ENST00000433383 879 ntBASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 ELOCP8-201ENST00000439309 332 ntBASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 ELOCP15-201ENST00000442090 332 ntBASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 C1GALT1P2-201ENST00000510813 1104 ntBASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms