Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.26□□□□□ -1.57
COL6A1P12109 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
COL6A1P12109 AL022322.2-201ENST00000624072 20397 ntBASIC5.26□□□□□ -1.57
COL6A1P12109 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.26□□□□□ -1.57
COL6A1P12109 RPS4XP5-202ENST00000449995 1334 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A1P12109 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A1P12109 ZNF137P-201ENST00000456718 1920 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A1P12109 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.25□□□□□ -1.57
COL6A1P12109 ZNF33CP-201ENST00000432492 2030 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A1P12109 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.25□□□□□ -1.57
COL6A1P12109 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A1P12109 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A1P12109 Y_RNA.38-201ENST00000362617 102 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 Y_RNA.97-201ENST00000363094 102 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 RNU6-116P-201ENST00000384042 109 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 MT-TD-201ENST00000387419 68 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 U8.14-201ENST00000390843 143 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 RPS26P8-201ENST00000393490 348 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 RPL12P9-201ENST00000412942 488 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 AL136133.1-201ENST00000413694 376 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 AC079809.1-201ENST00000415468 276 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 RPL7AP25-201ENST00000423357 805 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A1P12109 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC5.25□□□□□ -1.57
COL6A1P12109 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC5.25□□□□□ -1.57
COL6A1P12109 RPS17P8-201ENST00000434525 335 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 RABEPKP1-201ENST00000440529 1026 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.25□□□□□ -1.57
COL6A1P12109 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A1P12109 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.25□□□□□ -1.57
COL6A1P12109 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC5.25□□□□□ -1.57
COL6A1P12109 RPS20P21-201ENST00000466859 343 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 AC079382.1-201ENST00000493346 557 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 RPL36AP41-201ENST00000493820 306 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 AP002812.1-201ENST00000495378 474 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 AC091951.2-201ENST00000500762 203 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC5.25□□□□□ -1.57
COL6A1P12109 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC5.25□□□□□ -1.57
COL6A1P12109 MTND3P22-201ENST00000510932 243 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 AC108064.1-201ENST00000513791 460 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 RNU6-358P-201ENST00000516564 75 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 SNORA48.10-201ENST00000516965 160 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC5.25□□□□□ -1.57
COL6A1P12109 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.25□□□□□ -1.57
COL6A1P12109 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
COL6A1P12109 AC022878.1-201ENST00000530684 149 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC5.25□□□□□ -1.57
COL6A1P12109 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.25□□□□□ -1.57
COL6A1P12109 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC5.25□□□□□ -1.57
COL6A1P12109 AC009101.1-201ENST00000568135 242 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 AC053481.3-201ENST00000577881 843 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 MIR5697-201ENST00000578045 78 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 AC090616.5-202ENST00000582111 297 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 UBE2V2P2-201ENST00000587677 504 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 AC022916.3-201ENST00000592961 742 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 AL117336.2-201ENST00000602435 335 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 AC112191.3-201ENST00000604371 277 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 LINC00901.1-201ENST00000617252 152 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 BX005214.3-202ENST00000619809 325 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 AL136221.1-201ENST00000621449 509 ntBASIC5.25□□□□□ -1.57
COL6A1P12109 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
COL6A1P12109 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A1P12109 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC5.25□□□□□ -1.57
COL6A1P12109 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A1P12109 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.25□□□□□ -1.57
COL6A1P12109 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
COL6A1P12109 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.25□□□□□ -1.57
COL6A1P12109 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL6A1P12109 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
COL6A1P12109 AL022578.1-201ENST00000439330 1433 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL6A1P12109 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL6A1P12109 ANKRD20A10P-201ENST00000457591 1515 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL6A1P12109 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
COL6A1P12109 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL6A1P12109 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.24□□□□□ -1.57
COL6A1P12109 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL6A1P12109 RNU1-94P-201ENST00000362627 173 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 RNU1-13P-201ENST00000384499 162 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 RNU1-82P-201ENST00000390851 165 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 RNA5SP44-201ENST00000410446 133 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 RPS3AP3-201ENST00000411933 242 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 COX5BP7-201ENST00000414780 274 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC5.24□□□□□ -1.57
COL6A1P12109 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC5.24□□□□□ -1.57
COL6A1P12109 AL136231.1-201ENST00000429407 730 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC5.24□□□□□ -1.57
COL6A1P12109 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC5.24□□□□□ -1.57
COL6A1P12109 RPS4XP4-201ENST00000443195 763 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 RPL7AP61-201ENST00000443410 636 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 PHBP16-201ENST00000446318 950 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC5.24□□□□□ -1.57
COL6A1P12109 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC5.24□□□□□ -1.57
COL6A1P12109 RN7SL810P-201ENST00000493031 276 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 RN7SL558P-201ENST00000497468 299 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 AC019235.1-201ENST00000503847 207 ntBASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms