Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC021678.1-201ENST00000505195 936 ntBASIC3.17□□□□□ -1.9
TMX2-CTNND1H3BSU7 AP003355.1-201ENST00000518956 587 ntBASIC3.17□□□□□ -1.9
TMX2-CTNND1H3BSU7 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
TMX2-CTNND1H3BSU7 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC3.17□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC3.17□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.17□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC026741.1-201ENST00000605892 482 ntBASIC3.17□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC009464.1-201ENST00000615731 469 ntBASIC3.17□□□□□ -1.9
TMX2-CTNND1H3BSU7 uc_338.9-201ENST00000617424 182 ntBASIC3.17□□□□□ -1.9
TMX2-CTNND1H3BSU7 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.17□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
TMX2-CTNND1H3BSU7 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.17□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.17□□□□□ -1.9
TMX2-CTNND1H3BSU7 GTF2H2B-203ENST00000508065 1432 ntBASIC3.17□□□□□ -1.9
TMX2-CTNND1H3BSU7 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
TMX2-CTNND1H3BSU7 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
TMX2-CTNND1H3BSU7 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
TMX2-CTNND1H3BSU7 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 METTL21EP-201ENST00000298105 713 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 MIR16-2-201ENST00000362117 81 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 RNU4-31P-201ENST00000384211 141 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 Y_RNA.500-201ENST00000384466 111 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 Z99755.1-201ENST00000414048 380 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC012065.2-201ENST00000421295 375 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC013410.2-201ENST00000422627 201 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 RPL23AP82-202ENST00000427528 469 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 FO393419.3-201ENST00000428741 282 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 NANOGNBP1-201ENST00000448444 480 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 RSL24D1P3-201ENST00000449255 495 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC140076.1-201ENST00000449897 361 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 RPS20P32-201ENST00000456044 356 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 CENPBD1P1-201ENST00000464061 469 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC078817.1-201ENST00000492623 435 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 RPL5P23-201ENST00000496040 868 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 NAMPTP2-201ENST00000505629 1115 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 C1GALT1P2-201ENST00000510813 1104 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 RNU2-58P-201ENST00000516403 183 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC245166.1-201ENST00000521012 253 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC022884.3-201ENST00000579571 248 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 RN7SL622P-201ENST00000585292 275 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 DNAJC19P3-201ENST00000594491 331 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AL451007.1-201ENST00000595491 289 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC018618.2-201ENST00000604770 446 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC079610.2-201ENST00000604818 690 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC093732.2-201ENST00000607950 274 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC024933.1-201ENST00000608472 348 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC021851.1-201ENST00000608537 1082 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 MIR7973-1-201ENST00000614683 76 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 RMST_10.1-201ENST00000616309 154 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AC138932.5-201ENST00000617759 563 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 FRG1HP-204ENST00000617940 757 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 SNORD39.4-201ENST00000620099 78 ntBASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.16□□□□□ -1.9
TMX2-CTNND1H3BSU7 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
TMX2-CTNND1H3BSU7 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
TMX2-CTNND1H3BSU7 RNA5SP383-201ENST00000362934 120 ntBASIC3.15□□□□□ -1.91
TMX2-CTNND1H3BSU7 MIR591-201ENST00000385290 95 ntBASIC3.15□□□□□ -1.91
TMX2-CTNND1H3BSU7 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
TMX2-CTNND1H3BSU7 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
TMX2-CTNND1H3BSU7 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.15□□□□□ -1.91
TMX2-CTNND1H3BSU7 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.15□□□□□ -1.91
TMX2-CTNND1H3BSU7 NDUFB4P5-201ENST00000415445 361 ntBASIC3.15□□□□□ -1.91
TMX2-CTNND1H3BSU7 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.15□□□□□ -1.91
TMX2-CTNND1H3BSU7 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.15□□□□□ -1.91
TMX2-CTNND1H3BSU7 MTCO1P43-201ENST00000431831 488 ntBASIC3.15□□□□□ -1.91
TMX2-CTNND1H3BSU7 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.15□□□□□ -1.91
TMX2-CTNND1H3BSU7 AC105402.2-201ENST00000438503 358 ntBASIC3.15□□□□□ -1.91
TMX2-CTNND1H3BSU7 AC097499.1-201ENST00000444277 208 ntBASIC3.15□□□□□ -1.91
TMX2-CTNND1H3BSU7 ARL5AP2-201ENST00000444698 533 ntBASIC3.15□□□□□ -1.91
TMX2-CTNND1H3BSU7 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms