Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AL122126.1-201ENST00000546905 1318 ntBASIC4.97□□□□□ -1.61
LIMCH1Q9UPQ0 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.96□□□□□ -1.61
LIMCH1Q9UPQ0 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
LIMCH1Q9UPQ0 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
LIMCH1Q9UPQ0 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 RPL23AP57-201ENST00000332361 466 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 RNU1-14P-201ENST00000362759 152 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 RNA5SP505-201ENST00000364748 108 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 SNORA75-201ENST00000384158 137 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 RNU6-1042P-201ENST00000384204 107 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 EIF5P1-201ENST00000400019 1231 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AL121834.1-202ENST00000404494 277 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AL024474.1-201ENST00000404655 591 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 MIR1305-201ENST00000408300 86 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 RNA5SP36-201ENST00000410197 133 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 RN7SKP266-201ENST00000410232 287 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AC109780.2-201ENST00000413467 845 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 MTND1P28-201ENST00000435623 950 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AC239367.2-201ENST00000447309 705 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AC090453.1-201ENST00000495560 436 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 RNF138P1-201ENST00000502765 546 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 PRELID3BP7-201ENST00000503606 469 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 TMEM251P1-201ENST00000503717 318 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AC110792.2-201ENST00000510278 224 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 RNA5SP360-201ENST00000516555 118 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AC005771.1-201ENST00000585581 349 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AL139395.1-201ENST00000603662 160 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 PRELID3BP8-201ENST00000604148 295 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AC087241.4-201ENST00000612441 480 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 ZNF962P-201ENST00000443465 3140 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 AL356473.1-201ENST00000406203 1408 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 MAPK10-253ENST00000641010 4072 ntBASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC4.96□□□□□ -1.62
LIMCH1Q9UPQ0 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 AL158163.1-201ENST00000603915 1649 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 OR10J6P-201ENST00000289731 930 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 RNU5F-6P-201ENST00000362979 116 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 RNU6-1226P-201ENST00000384317 107 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 Y_RNA.517-201ENST00000384551 106 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 RNA5SP332-201ENST00000391063 115 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 ARF4P3-201ENST00000397387 509 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 LAP3P1-201ENST00000403648 294 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 AC119751.6-201ENST00000416712 186 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 AC004552.1-201ENST00000419089 348 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 RPS26P3-201ENST00000470205 348 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 AC090543.2-201ENST00000483963 348 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 AC004057.1-201ENST00000485827 348 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 RN7SL691P-201ENST00000494487 301 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 AC022447.3-201ENST00000506865 495 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 RNU6-405P-201ENST00000516637 110 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 RN7SKP82-201ENST00000516786 223 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 AC025881.1-201ENST00000518851 512 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 OR6C73P-201ENST00000546432 358 ntBASIC4.95□□□□□ -1.62
LIMCH1Q9UPQ0 CR383656.6-201ENST00000550518 394 ntBASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms