Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC026726.1-201ENST00000512859 601 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 RNU6-759P-201ENST00000516740 103 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 OR4A45P-201ENST00000529954 901 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
NKX3-1Q99801 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 AL360157.1-201ENST00000565962 87 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 AC135628.1-201ENST00000568867 534 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 AC141257.3-201ENST00000572906 215 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 MAGOH2P-202ENST00000584384 429 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
NKX3-1Q99801 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 AC099669.2-201ENST00000616549 437 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 AL591424.2-201ENST00000617023 128 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 AC078883.4-201ENST00000623218 367 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 AC231657.1-201ENST00000624313 397 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 AP002907.1-201ENST00000606361 1430 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
NKX3-1Q99801 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 AL353746.1-201ENST00000566293 6881 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 HSPA8P1-201ENST00000425843 1833 ntBASIC3.49□□□□□ -1.85
NKX3-1Q99801 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.49□□□□□ -1.85
NKX3-1Q99801 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
NKX3-1Q99801 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.48□□□□□ -1.85
NKX3-1Q99801 AL390862.1-201ENST00000635467 1469 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
NKX3-1Q99801 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
NKX3-1Q99801 SNORD116-8-201ENST00000384365 95 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 MIR153-1-201ENST00000384914 90 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 RPS26P8-201ENST00000393490 348 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 DHFRP6-201ENST00000401776 268 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
NKX3-1Q99801 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.48□□□□□ -1.85
NKX3-1Q99801 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC3.48□□□□□ -1.85
NKX3-1Q99801 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.48□□□□□ -1.85
NKX3-1Q99801 AC234781.2-201ENST00000426370 994 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 TXNL1P1-201ENST00000429528 554 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.48□□□□□ -1.85
NKX3-1Q99801 FTH1P6-201ENST00000430768 320 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 COX6B1P7-201ENST00000430845 235 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
NKX3-1Q99801 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC3.48□□□□□ -1.85
NKX3-1Q99801 EEF1E1P1-201ENST00000446998 430 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.48□□□□□ -1.85
NKX3-1Q99801 OR6C5P-201ENST00000452388 923 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.48□□□□□ -1.85
NKX3-1Q99801 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC3.48□□□□□ -1.85
NKX3-1Q99801 RPL36AP13-201ENST00000457490 317 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.48□□□□□ -1.85
NKX3-1Q99801 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.48□□□□□ -1.85
NKX3-1Q99801 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.48□□□□□ -1.85
NKX3-1Q99801 AC108475.1-201ENST00000507880 950 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 AC109458.1-201ENST00000508858 316 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 MTCO3P44-201ENST00000510977 541 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 KCTD9P2-201ENST00000512203 1013 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 AC026412.2-201ENST00000512270 1075 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 AC010342.1-201ENST00000514047 877 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 RNA5SP143-201ENST00000516936 115 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.48□□□□□ -1.85
NKX3-1Q99801 DEFB131D-201ENST00000526803 184 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
NKX3-1Q99801 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.48□□□□□ -1.85
NKX3-1Q99801 CYCSP2-201ENST00000558168 301 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.48□□□□□ -1.85
NKX3-1Q99801 AC008088.1-201ENST00000580993 280 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 MIR5684-201ENST00000585074 65 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
NKX3-1Q99801 AC007566.2-201ENST00000603642 413 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 AC018714.1-201ENST00000605028 208 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 AC004908.3-201ENST00000610248 625 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 FAM27D1-201ENST00000612308 341 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
NKX3-1Q99801 AC011978.2-201ENST00000569835 2054 ntBASIC3.48□□□□□ -1.85
NKX3-1Q99801 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
NKX3-1Q99801 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
NKX3-1Q99801 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 RNU6-374P-201ENST00000364146 108 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.47□□□□□ -1.85
NKX3-1Q99801 SNORA70E-201ENST00000384492 135 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 SNORA70C-201ENST00000384538 135 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 RN7SKP182-201ENST00000410772 298 ntBASIC3.47□□□□□ -1.85
NKX3-1Q99801 TPT1P2-201ENST00000413105 503 ntBASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms