Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 MTATP6P9-201ENST00000515039 680 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 RNA5SP380-201ENST00000517190 98 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 RNU1-45P-201ENST00000517191 141 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.18□□□□□ -1.9
SKA3Q8IX90 AC008489.1-201ENST00000524271 483 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 DEFB130C-202ENST00000530001 230 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 LRRC6P1-201ENST00000532188 885 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 OR8K4P-201ENST00000534608 872 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.18□□□□□ -1.9
SKA3Q8IX90 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC3.18□□□□□ -1.9
SKA3Q8IX90 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.18□□□□□ -1.9
SKA3Q8IX90 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.18□□□□□ -1.9
SKA3Q8IX90 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC3.18□□□□□ -1.9
SKA3Q8IX90 MIR5708-201ENST00000579723 85 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 AC006077.1-201ENST00000604746 343 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 AL121652.1-201ENST00000608851 448 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.18□□□□□ -1.9
SKA3Q8IX90 AL161637.1-201ENST00000622380 412 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 AL732618.1-201ENST00000623251 301 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 AL356863.1-201ENST00000623378 1080 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 AC099654.9-201ENST00000637055 678 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 AL445984.1-201ENST00000637834 659 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.18□□□□□ -1.9
SKA3Q8IX90 AL732372.2-225ENST00000642124 456 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SKA3Q8IX90 AC007656.2-201ENST00000624902 4547 ntBASIC3.18□□□□□ -1.9
SKA3Q8IX90 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
SKA3Q8IX90 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
SKA3Q8IX90 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SKA3Q8IX90 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.18□□□□□ -1.9
SKA3Q8IX90 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
SKA3Q8IX90 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SKA3Q8IX90 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.17□□□□□ -1.9
SKA3Q8IX90 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SKA3Q8IX90 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.17□□□□□ -1.9
SKA3Q8IX90 RNU1-85P-201ENST00000364127 164 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 RNU6-224P-201ENST00000384055 107 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 MIR554-201ENST00000384874 96 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 MIR134-201ENST00000385258 73 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 RPL21P17-201ENST00000397467 475 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 MTCO1P56-201ENST00000401674 224 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 AL121978.1-201ENST00000402778 359 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 AL079342.2-201ENST00000403367 482 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 HSPE1P26-201ENST00000405341 275 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 RAB9AP3-201ENST00000412737 573 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 AL136133.1-201ENST00000413694 376 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 FCF1P2-201ENST00000415284 583 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 AL449283.1-202ENST00000418249 604 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 RAC1P8-201ENST00000427086 527 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 AC096632.1-201ENST00000427395 310 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 AC114973.1-201ENST00000429057 632 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SKA3Q8IX90 AC122718.1-201ENST00000439448 744 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.17□□□□□ -1.9
SKA3Q8IX90 ZNF736P11Y-201ENST00000442535 1213 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 ZNF736P12Y-201ENST00000443152 1243 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 RPS3AP46-201ENST00000448352 682 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 RAB9AP1-201ENST00000449393 573 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.17□□□□□ -1.9
SKA3Q8IX90 ZNF736P4Y-201ENST00000454995 1243 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 AC010401.1-201ENST00000463867 348 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 FAM133DP-201ENST00000464802 691 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 RN7SL542P-201ENST00000467147 294 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 DYNLL1P6-201ENST00000503440 264 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 TMEM248P1-201ENST00000510579 951 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 AC023632.4-201ENST00000517783 191 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.17□□□□□ -1.9
SKA3Q8IX90 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC3.17□□□□□ -1.9
SKA3Q8IX90 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.17□□□□□ -1.9
SKA3Q8IX90 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC3.17□□□□□ -1.9
SKA3Q8IX90 MTCO1P49-201ENST00000523429 802 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.17□□□□□ -1.9
SKA3Q8IX90 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.17□□□□□ -1.9
SKA3Q8IX90 AC011602.1-201ENST00000546484 331 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.17□□□□□ -1.9
SKA3Q8IX90 TGIF1P1-201ENST00000558095 802 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC3.17□□□□□ -1.9
SKA3Q8IX90 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.17□□□□□ -1.9
SKA3Q8IX90 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.17□□□□□ -1.9
SKA3Q8IX90 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.17□□□□□ -1.9
SKA3Q8IX90 AL445435.1-201ENST00000604232 665 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.17□□□□□ -1.9
SKA3Q8IX90 AL592148.2-201ENST00000612210 372 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 AC098679.5-201ENST00000624394 571 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 AC087821.2-201ENST00000637086 450 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 ZNF663P-202ENST00000641770 1131 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SKA3Q8IX90 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SKA3Q8IX90 ZNF285B-201ENST00000561698 1767 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SKA3Q8IX90 AC021755.1-201ENST00000559747 1447 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SKA3Q8IX90 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.17□□□□□ -1.9
SKA3Q8IX90 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SKA3Q8IX90 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
SKA3Q8IX90 AC073073.2-201ENST00000609827 2578 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SKA3Q8IX90 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
SKA3Q8IX90 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SKA3Q8IX90 RNU1-75P-201ENST00000347264 129 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 134.4 ms