Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MIR6715B-201ENST00000637172 77 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 GDI2P1-201ENST00000429312 1336 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 OR4G11P-202ENST00000642116 1414 ntBASIC4.1□□□□□ -1.75
COL28A1Q2UY09 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL28A1Q2UY09 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 RNA5SP502-201ENST00000362694 119 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 RNU6-730P-201ENST00000383954 104 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 PTMAP5-201ENST00000393073 333 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 EIF5P1-201ENST00000400019 1231 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 USP9YP33-201ENST00000412220 421 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 TEX41-202ENST00000414256 604 ntTSL 5 BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 RPL31P45-201ENST00000419532 356 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 OFD1P18Y-201ENST00000420889 959 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 AL953862.1-201ENST00000423016 168 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 AL049610.1-201ENST00000423374 372 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 AL593851.1-201ENST00000426171 157 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 OR51AB1P-201ENST00000429046 620 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 USP9YP35-201ENST00000435696 412 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 RPL23AP74-201ENST00000437246 471 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 DDX39BP2-208ENST00000453923 258 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 RPS27AP17-201ENST00000463344 455 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 PABPC1P3-201ENST00000469174 459 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 RN7SL691P-201ENST00000494487 301 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 MTCYBP17-201ENST00000503579 789 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 XKRY-201ENST00000510392 1100 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 RNU4ATAC10P-201ENST00000516967 122 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 OR8L1P-201ENST00000534005 955 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 OR4G1P-201ENST00000588632 938 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 VN1R90P-201ENST00000595717 726 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 AC090181.2-201ENST00000602975 672 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 AL161729.3-201ENST00000603533 673 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 RPL23AP92-201ENST00000603609 255 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 VIS1.1-201ENST00000610517 203 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 AL442067.2-201ENST00000614033 363 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 AC009318.4-201ENST00000620496 486 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 U6.101-201ENST00000637707 76 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.09□□□□□ -1.75
COL28A1Q2UY09 AC024560.2-201ENST00000507981 1497 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 AL359893.1-201ENST00000447628 1580 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 MTCO1P24-201ENST00000515438 1558 ntBASIC4.09□□□□□ -1.75
COL28A1Q2UY09 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
COL28A1Q2UY09 AC011266.1-201ENST00000624119 3569 ntBASIC4.09□□□□□ -1.76
COL28A1Q2UY09 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
COL28A1Q2UY09 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
COL28A1Q2UY09 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.09□□□□□ -1.76
COL28A1Q2UY09 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 RNA5SP151-201ENST00000365632 117 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 MIR513A2-201ENST00000385249 127 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 ZNF734P-201ENST00000419494 1534 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 DNAJA1P2-201ENST00000421360 1197 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 PSMA2P3-201ENST00000429685 675 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AL365396.1-201ENST00000430854 671 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 USP9YP34-201ENST00000453983 808 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AC097493.1-201ENST00000463958 372 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AL136126.1-201ENST00000473603 402 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AC108941.1-201ENST00000502853 530 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 OR5H5P-201ENST00000503164 928 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 HIGD1AP3-201ENST00000515857 278 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 RNA5SP497-201ENST00000516081 97 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 RNA5SP216-201ENST00000516111 123 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 AC104986.1-201ENST00000517978 436 ntBASIC4.08□□□□□ -1.76
COL28A1Q2UY09 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC4.08□□□□□ -1.76
COL28A1Q2UY09 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms